PO.CL01.08 · 临床研究
血浆循环游离RNA中的生物标志物尾部基因可实现前列腺癌的准确检测
Biomarker tail genes in blood plasma cell-free RNA enable accurate detection of prostate cancer
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
本研究的目的是评估在血浆mRNA谱中表现出强烈偏离丰度的转录本是否能够可靠地区分前列腺癌与非癌状态。为此,我们聚焦于生物标志物尾部基因(BTG),其定义为单个样本中无细胞转录本丰度较健康对照参考分布偏离至少三个标准差的蛋白编码基因。我们将BTG识别与分类工作流程应用于新诊断前列腺癌个体(n = 132;62例早期,70例晚期)和健康供者(n = 48)的血浆样本。使用训练-测试交叉验证方法(70%)建立分类阈值,并在留出的验证样本(30%)以及一个独立的非恶性队列(包括健康供者[n=37]和非恶性疾病患者[n=88])中评估性能。
在训练和验证分析中,一组由247个前列腺癌BTG组成的共识集能够区分前列腺癌样本与健康对照,在男性供者验证队列中灵敏度和特异性均达到100%。值得注意的是,每份血浆样本的BTG数量与疾病分期无关,且在年龄匹配的亚组中分类仍高度准确,表明年龄对结果的影响有限。当应用于患有多种非恶性疾病的个体队列时,所建立的BTG阈值产生了94.4%的特异性,且无一例良性前列腺增生患者被误分类(n=5)。
为探究BTG集内的冗余性,我们评估了聚类衍生的子集和算法选择的最小panel。多个小子集,包括通过贪婪选择策略识别的十基因panel,在验证队列中实现了完美分类,表明即使BTG集被大幅缩减,其强大的区分能力仍得以保留。
总之,血浆BTG构成了一种高度准确的前列腺癌检测特征,而小BTG子集能够重现全集性能这一点凸显了靶向检测的机会。在更广泛人群和不同癌症分期中的进一步评估将完善基于BTG的方法在早期检测和监测中的潜力。
(最后两位作者对本工作贡献相同)
查看英文原文 English abstract
The purpose of this study was to assess whether transcripts exhibiting strongly deviating abundance in plasma mRNA profiles can reliably differentiate prostate cancer from non-cancer states. To do so, we focused on biomarker tail genes (BTG), defined as protein-coding genes whose cell-free transcript abundance in an individual sample deviates by at least three standard deviations from a healthy control reference distribution. We applied the BTG identification and classification workflow to blood plasma samples from individuals with newly diagnosed prostate cancer (n = 132; 62 early-stage, 70 late-stage) and healthy donors (n = 48). Classification thresholds were established using a train-test cross validation approach (70%), and performance was evaluated in held-out validation samples (30%) and in a separate non-malignant cohort including healthy donors (n=37) and patients with non-malignant conditions (n=88).
Across training and validation analyses, a consensus set of 247 prostate cancer BTG enabled discrimination between prostate cancer samples and healthy controls, with sensitivity and specificity reaching 100% in the validation cohort of male donors. Of note, the number of BTG per plasma sample was not associated with disease stage, and classification remained highly accurate in age-matched subsets, indicating limited influence of age on results. When applied to a cohort of individuals with diverse non-malignant conditions, the established BTG threshold yielded 94.4% specificity, and none of patients with benign prostatic hyperplasia were misclassified (n=5).
To explore redundancy within the BTG set, we evaluated both cluster-derived subsets and algorithmically selected minimal panels. Multiple small subsets, including a ten-gene panel identified by a greedy selection strategy, achieved perfect classification within the validation cohort, demonstrating that strong discriminatory power is retained even when BTG sets are substantially reduced.
In conclusion, blood plasma BTG constitute a highly accurate signature for prostate cancer detection, and the ability of small BTG subsets to reproduce full-set performance highlights opportunities for targeted assays. Further evaluation in broader populations and across cancer stages will refine the potential of BTG-based approaches for early detection and monitoring.
(The last two authors contributed equally to this work)
利益披露 Disclosure
A. Morlion, None..
P. Decruyenaere, None..
K. Schoofs, None..
J. Anckaert, None..
N. J. Ramirez, None..
J. Nuytens, None..
E. Vanden Eynde, None..
K. Verniers, None..
C. Everaert, None..
G. Brusselle, None..
S. Callens, None..
F. Haerynck, None..
D. Hemelsoet, None..
E. Hoste, None..
J. Lambert, None..
N. Lumen, None..
F. Offner, None..
K. Paemeleire, None..
V. Smith, None..
L. Van den Eynde, None..
J. Van Dorpe, None..
A. Vanhaecke, None..
H. Van Vlierberghe, None..
A. Mariman, None..
O. Thas, None..
J. Vandesompele, None..
P. Mestdagh, None.