PO.BCS02.01 · 生物信息与计算
CertisAI Assistant:用于动态临床前肿瘤学模型选择的智能体 AI 平台
CertisAI Assistant: An agentic AI platform for dynamic preclinical oncology model selection
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
传统的肿瘤模型选择通常作为一个靶点驱动的过程运作,主要依赖既定的生物标志物策略和既往治疗特征来识别与特定治疗目标相符的模型。这种植根于静态、回顾性数据集的方法学,常常限制了研究范围,并可能导致选择对复杂临床结局预测能力较弱的模型。为改进临床前肿瘤模型的选择标准,我们开发了 CertisAI Assistant,这是一个智能体 AI 平台,在统一的研究环境中将实时、按需的治疗反应预测与深度表征的肿瘤模型数据集相集成。
CertisAI Assistant 作为一个交互式研究工具运作,整合了来自癌症细胞系百科全书(CCLE)的模型和 Certis 专有的患者来源异种移植(PDX)数据。其核心是 CertisAI,这是一个基于大量单药和联合用药反应数据训练的机器学习模型集成,利用基因表达和分子指纹。我们构建了一个安全的自助客户端,使用户能够上传新型治疗化合物(通过 SMILES 字符串)或测序数据(通过 FASTQ 文件),以获得即时、按需的治疗预测。
预测结果被动态整合到生成式 AI 助手中,支持自然语言查询和比较分析。关键的可视化,包括单药和联合治疗的预测结果,可即时获得。CertisAI Assistant 超越了静态数据交付,为治疗反应预测和模型选择提供了一个动态、实时的分析环境。该平台通过使用户能够快速验证假设、评估新型药物并指导有效联合策略的开发,显著加速了临床前肿瘤学研究。
查看英文原文 English abstract
Conventional tumor model selection often operates as a target-driven process, relying primarily on established biomarker strategies and prior treatment profiles to identify models aligned with a specific therapeutic goal. This methodology, rooted in static, retrospective datasets, frequently limits the scope of investigation and can result in selecting models that have reduced predictive power for complex clinical outcomes. To enhance the selection criteria for preclinical tumor models, we developed the CertisAI Assistant, an agentic AI platform that integrates real-time, on-demand therapeutic response prediction with deeply characterized tumor model datasets within a unified research environment.
The CertisAI Assistant functions as an interactive research tool, integrating models from the Cancer Cell Line Encyclopedia (CCLE) and Certis' proprietary patient-derived xenograft (PDX) data. Its core is CertisAI, an ensemble of machine learning models trained on extensive monotherapy and combination drug response data, leveraging gene expression and molecular fingerprints. We engineered a secure, self-service client that enables users to upload novel therapeutic compounds (via SMILES string) or sequencing data (via FASTQ files) for immediate, on-demand therapeutic predictions.
Prediction results are dynamically integrated into the generative AI assistant, allowing for natural language querying and comparative analysis. Key visualizations, including mono and combination therapy prediction results, are instantly available. The CertisAI Assistant moves beyond static data delivery, providing a dynamic, real-time analysis environment for therapeutic response prediction and model selection. This platform significantly accelerates preclinical oncology research by empowering users to rapidly test hypotheses, evaluate novel agents, and guide the development of effective combination strategies.
利益披露 Disclosure
L. Jervis, None..
W. Andrews, None..
Y. Chien, None..
L. H. Do, None.