PO.BCS01.03 · 生物信息与计算

一种基于原发肿瘤转录组学和组织病理形态学预测前列腺癌转移的多模态模型

A multimodal model to forecast prostate cancer metastasis from primary tumor transcriptomics and histopathology morphology

海报缩略图:一种基于原发肿瘤转录组学和组织病理形态学预测前列腺癌转移的多模态模型
编号 2678 展板 3 时间 4/20 02:00–05:00 区域 Section 1 主讲 Itzel Valencia, MS
分会场 Application of Bioinformatics to Cancer Biology 3
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作者与单位 Authors & Affiliations

Itzel Valencia1, Priyanka Vasanthakumari1, Pier V. Nuzzo2, Edoardo Francini3, Francesco Ravera4, Giuseppe N. Fanelli2, Sara Bleve5, Cristian Scatena6, Luigi Marchionni2, Mohamed Omar7

1Cedars-Sinai Medical Center, Los Angeles, CA,2Weill Cornell Medicine, New York, NY,3Department of Experimental and Clinical Medicine, University of Florence, Florence, Italy,4University of Genoa, Genova, Italy,5IRCCS Istituto Romagnolo per lo Studio dei Tumori (IRST), Meldona, Italy,6Department of Translational Medicine and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy,7Cedars-Sinai Medical Center, West Hollywood, CA

摘要 Abstract

中文摘要
前列腺癌(PCa)是美国男性最常诊断的非皮肤恶性肿瘤,而转移性播散仍是死亡的主要驱动因素。虽然晚期疾病通常采用雄激素剥夺治疗进行管理,但大多数患者最终进展为去势抵抗性PCa,凸显了早期识别易发生转移肿瘤的必要性。临床病理指标,包括PSA、肿瘤分期和Gleason分级,仅能提供粗略的风险估计,无法捕捉疾病进展背后的分子和空间异质性。为解决这一局限,我们开发了Met-Score,这是一种源自对1239例PCa患者原发肿瘤表达谱进行meta分析的转录组学特征。采用严格的训练(n=1000)和独立验证(n=239)设计,我们计算了各队列间基因水平的Hedges效应量,使用随机效应模型进行汇总,采用Fisher法和对数求和法整合各数据集的证据,并应用错误发现率校正以识别与转移进展最强相关的基因。在验证队列中,Met-Score预测转移的AUC达到0.72,并且在两个独立数据集中,即使在校正Gleason评分后,仍保持对总生存、无转移生存和无进展生存的独立预后价值,证明了其超越标准病理学的临床相关性。为探究Met-Score是否反映常规组织病理中编码的形态学表型,我们从前列腺活检和前列腺切除标本的数字化H&E切片中量化了形态测量特征。Met-Score与多种结构和细胞学描述符显示出显著关联,提示该特征捕捉了与标准组织切片上可观察到的微观解剖模式紧密耦合的转录程序。基于这一分子与形态学读数之间的联系,我们训练了一个整合Met-Score与图像衍生的Morph-Score的多模态风险模型,并将其性能与单模态预测因子进行了基准比较。我们的初步分析表明,与单独使用转录组学或组织病理学相比,该多模态框架显著增强了风险判别能力,并更准确地识别出可能发生转移的患者。这项工作凸显了将深层分子特征与可解释的形态测量特征相结合以改善局限性PCa预后判断的潜力,并为实体瘤中的多模态生物标志物开发建立了一种广泛适用的策略。
查看英文原文 English abstract
Prostate cancer (PCa) is the most commonly diagnosed non-cutaneous malignancies in men in the United States, and metastatic dissemination remains the principal driver mortality. While advanced disease is typically managed with androgen deprivation therapy, most patients eventually progress to castration-resistant PCa, underscoring the need for early identification of tumors predisposed to metastasis. Clinicopathological metrics, including PSA, tumor stage, and Gleason grade, provide only coarse estimates of risk and fail to capture the molecular and spatial heterogeneity underlying disease progression. To address this limitation, we developed Met-Score , a transcriptomic signature derived from meta-analysis of primary tumor expression profiles from 1,239 PCa patients. Using a rigorous training (n=1000) and independent validation (n=239) design, we computed gene-level Hedges' effect sizes across cohorts, pooled them using a random-effects model, integrated evidence across datasets using Fisher's and log-sum methods, and applied false discover rate correction to identify genes most strongly associated with metastatic progression. In the validation cohort, Met-Score achieved an AUC of 0.72 for predicting metastasis, and maintained independent prognostic value for overall, metastasis-free, and progression-free survival across two independent datasets, even after adjustment for Gleason score, demonstrating its clinical relevance beyond standard pathology. To investigate whether Met-Score reflects morphological phenotypes encoded in routine histopathology, we quantified morphometric features from digitized H&E slides of prostate biopsies and prostatectomies. Met-Score showed significant associations with multiple architectural and cytological descriptors, suggesting that the signature captures transcriptional programs tightly coupled to microanatomical patterns observable on standard tissue sections. Building upon this link between molecular and morphological readouts, we trained a multimodal risk model that integrates Met-Score with an image-derived Morph-Score , and benchmarked its performance against unimodal predictors. Our preliminary analysis indicates that the multimodal framework substantially enhances risk discrimination and more accurately identifies patients likely to develop metastasis compared to transcriptomics or histopathology alone. This work highlights the potential of combining deep molecular features with interpretable morphometric signatures to improve prognostication in localized PCa, and establishes a broadly applicable strategy for multimodal biomarker development in solid tumors.
利益披露 Disclosure
I. Valencia, None.. E. Francini, None.. S. Bleve, None.. C. Scatena, None.

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