PO.BCS01.08 · 生物信息与计算
ViewsML vIHC平台用于生物标志物分类和强度分箱的验证:与Histowiz PathologyMap平台的试点合作
Validation of the ViewsML vIHC platform for biomarker classification and intensity binning: A pilot collaboration with Histowiz's PathologyMap platform
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
本研究的目的是验证ViewsML的虚拟免疫组化(vIHC)平台,该系统基于H&E全玻片图像生成虚拟生物标志物预测。这项与Histowiz PathologyMap平台的合作使得能够评估vIHC在PathologyMap数据库中的部署,展示了其作为生物标志物发现工作流可扩展且实用替代方案的潜力。经委员会认证的解剖病理学家采集了50例肺癌病例进行分析。将福尔马林固定石蜡包埋(FFPE)蜡块以4 μm厚度一式四份切片至带正电荷的玻片上。每张玻片使用符合GLP规范的H&E染色进行染色,并在Leica AT2上数字化扫描至Histowiz PathologyMap平台。随后将玻片脱色,并在Leica BOND Rx平台上用CD68、alphaSMA和Pan-CK免疫组化标志物重新染色并重新扫描。所得全玻片图像(WSI)由ViewsML处理,以训练AI模型从H&E图像预测IHC表达。对于每种生物标志物,首先对配对的H&E和IHC WSI进行空间配准以确保精确对齐。配对数据被随机分为训练集(75%)、验证集(10%)和测试集(15%)。训练有监督机器学习模型,以对应的物理IHC作为监督,从相应的H&E图像预测IHC表达强度。在留出测试集上进行评估以验证性能。一旦训练完成,这些模型即可直接从单张标准H&E玻片进行生物标志物预测。虚拟标志物表现出高分类性能,CD68的每细胞ROC-AUC值为0.94,PanCK为0.92,SMA为0.95。该模型在数百万个细胞上预测每细胞染色强度,在表达范围和组织区室间保留了生物学变异性。这项合作验证了ViewsML的虚拟染色作为物理IHC可靠计算替代方案的能力,能够进行定性和定量生物标志物评估。与Histowiz数字病理学基础设施的集成证明了将vIHC嵌入可扩展工作流中用于生物标志物研究、WSI库标注和检测标准化的可行性。这些发现支持ViewsML进一步的多机构扩展,以实现稳健、可重复且经济高效的生物标志物评估。
查看英文原文 English abstract
The purpose of this study was to validate ViewsML's Virtual Immunohistochemistry (vIHC) platform, a system that generates virtual biomarker predictions based on H&E whole slide images. This collaboration with Histowiz's PathologyMap platform enables evaluation of vIHC deployment across the PathologyMap database, demonstrating its potential as a scalable and practical alternative for biomarker discovery workflows. Board-certified anatomic pathologists procured 50 lung carcinoma cases for analysis. Formalin fixed paraffin embedded (FFPE) blocks were cut to 4 µm in quadruplicate onto positively charged slides. Each slide was stained with a GLP-regulated H&E stain and digitally scanned on a Leica AT2 onto the Histowiz PathologyMap platform. Slides were then de-stained and re-stained on a Leica BOND Rx platform with CD68, alphaSMA, and Pan-CK immunohistochemistry markers, and re-scanned. The resulting whole slide images (WSIs) were processed by ViewsML to train AI models to predict IHC expression from H&E images. For each biomarker, paired H&E and IHC WSIs were first spatially registered to ensure precise alignment. The paired data were randomly divided into training (75%), validation (10%), and test (15%) sets. Supervised machine-learning models were trained to predict IHC expression intensity from the corresponding H&E image, using the corresponding physical IHC as supervision. Evaluation was performed on the hold-out test set to verify performance. Once trained, these models enable biomarker predictions directly from a single standard H&E slide. The virtual markers demonstrated high classification performance, with per-cell ROC-AUC values of 0.94 for CD68, 0.92 for PanCK, and 0.95 for SMA. The model predicted per-cell stain intensity across millions of cells, preserving biological variability across expression ranges and tissue compartments.This collaboration validates ViewsML's virtual staining as a reliable computational alternative to physical IHC, capable of both qualitative and quantitative biomarker assessment. Integration with Histowiz's digital pathology infrastructure demonstrates the feasibility of embedding vIHC within scalable workflows for biomarker research, WSI repository annotation, and assay standardization. These findings support further multi-institutional expansion of ViewsML to enable robust, reproducible, and cost-efficient biomarker evaluation.
利益披露 Disclosure
A. Parvatikar, None..
P. Savickas, None..
C. Lee, None..
J. Shek, None..
K. To, None..
C. Jackson, None..
L. Schobs, None..
R. Lyons, None..
R. Azhar, None.