PO.BCS01.08 · 生物信息与计算

从H&E染色虚拟推断胶原结构以刻画结直肠癌基质纤维形态与组织构架

Virtual inference of collagen architecture from H&E to characterize stromal fiber morphology and organization in colorectal cancer

海报缩略图:从H&E染色虚拟推断胶原结构以刻画结直肠癌基质纤维形态与组织构架
编号 4167 展板 17 时间 4/21 09:00–12:00 区域 Section 3 主讲 Joshua Levy, PhD
分会场 Digital Pathology 3
查看 PDF 下载 PDF 🔒 查看 / 下载完整 PDF 需登录并开通下载套餐 · 查看套餐 / 开通 AACR 官方页面

作者与单位 Authors & Affiliations

Harsimran Kaur1, Minh-Khang Le2, Arkadiusz Gertych2, Maha Guindi2, Jun Gong3, Alexandra Gangi2, Kyle Coleman2, Jane C. Figueiredo4, Xiaoying Liu5, Louis J. Vaickus5, Keluo Yao6, Ken S. Lau7, Joshua Jay Levy2

1Vanderbilt University School of Medicine, Nashville, TN,2Cedars-Sinai Medical Center, Los Angeles, CA,3Cedars-Sinai Medical Center, Studio City, CA,4Samuel Oschin Comprehensive Cancer Institute, Los Angeles, CA,5Dartmouth-Hitchcock Medical Center, Lebanon, NH,6Cedars-Sinai, Los Angeles, CA,7Vanderbilt University Medical Center, Nashville, TN

摘要 Abstract

中文摘要
背景:胶原结构是结直肠肿瘤进展的关键决定因素,影响免疫排斥、成纤维细胞分化和肿瘤出芽,并在塑造肿瘤微环境中发挥核心作用。尽管已有图像分析算法可量化胶原特征(如纤维密度、取向和组织构架),但这些方法通常需要picrosirius red(PSR)等专门染色。能够直接从H&E切片推断胶原表型的计算方法,可支持对肿瘤空间基质生物学的更大规模研究,并助力预后影像生物标志物的开发。 方法:在这项试点研究中,将四张结直肠癌切片进行H&E染色并成像,随后重新用PSR染色并再次成像。经共配准的基质图块产生了40,740对训练/验证以及4,528对真实PSR与H&E测试图像图块。训练了两种生成式图像到图像转换模型——pix2pix和潜在扩散模型(latent diffusion model),以从H&E图块生成虚拟PSR(vPSR)图块。与H&E测试图块配对的真实PSR测试图块作为参考。对虚拟pix2pix(pix2pix-vPSR)、扩散(diffusion-vPSR)和真实PSR测试图块进行处理,以获得胶原纤维掩膜。随后,从每个掩膜中提取108项胶原纤维密度和取向特征,并采用Spearman相关系数将从pix2pix-vPSR和diffusion-vPSR胶原掩膜提取的特征与从真实PSR胶原掩膜提取的特征进行一致性比较。 结果:两种模型均与真实PSR特征产生了强相关,尤其是胶原面积分数(r > 0.89)、高密度基质分数(r > 0.86)、间隙圆计数(r > 0.86)、纤维脊面积(r > 0.83)、相干性/各向异性(r > 0.82)、分形维数(r > 0.82)、纤维角度(r > 0.80)和纤维长度(r > 0.80)。Diffusion-vPSR相关性位居前90%之列,并以平均Δr > 0.07超过pix2pix-vPSR相关性,这些增益见于基于纤维轮廓和厚度的特征,包括中位长度(Δr > 0.20)、厚度变异(Δr = 0.19)和不对称指数(Δr > 0.16)。在纤维熵长度、变异性以及偏度/峰度/间隙统计量方面观察到较小的改善(Δr = 0.07-0.11)。Pix2pix相关性仅在10%的特征上超过扩散模型相关性,主要为间隙纤维密度特征(Δr ≤ 0.05)。 讨论:本研究证明了从常规H&E切片生成vPSR图像以高保真度推断胶原结构的可行性。在更大队列中的更广泛应用与优化,将阐明胶原结构如何塑造肿瘤行为、复发风险和患者预后,从而支持空间生物标志物的进一步开发。
查看英文原文 English abstract
Background: Collagen architecture is a key determinant of colorectal tumor progression, influencing immune exclusion, fibroblast differentiation, and tumor budding, and plays a central role in shaping the tumor microenvironment. Although image analysis algorithms exist to quantify collagen features such as fiber density, orientation, and organization, but typically require specialized stains like picrosirius red (PSR). Computational methods that infer collagen phenotypes directly from H&E slides could enable larger studies of spatial tumor matrix biology and support development of prognostic imaging biomarkers. Methods: In this pilot study, four colorectal cancer slides were stained with H&E and imaged, then restained with PSR, and re-imaged. Co-registered stromal patches yielded 40,740 training/validation and 4,528 real PSR and H&E test image patch pairs. Two generative image-to-image translation models, pix2pix and a latent diffusion model were trained to generate virtual PSR (vPSR) patches from the H&E patches. The real PSR test patches paired with the H&E test patches served as reference. The virtual pix2pix (pix2pix-vPSR), diffusion (diffusion-vPSR) and real PSR test patches were processed to obtain collagen fiber masks. Subsequently, 108 collagen fiber density and orientation features were extracted from each mask and correspondence of the features extracted from pix2pix-vPSR and diffusion-vPSR collagen masks were compared with those extracted from real PSR collagen mask using Spearman correlation coefficients. Results: Both models produced strong correlations with real PSR features, particularly for collagen area fraction (r > 0.89), high-density matrix fraction (r > 0.86), gap circle count (r > 0.86), fiber spine area (r > 0.83), coherency/anisotropy (r > 0.82), fractal dimension (r > 0.82), fiber angle (r > 0.80), and fiber length (r > 0.80). Diffusion‑vPSR correlations ranked among the top 90% and exceeded pix2pix‑vPSR correlations by an average Δr > 0.07, with the gains observed for fiber contour- and thickness-based features, including median length (Δr > 0.20), thickness variation (Δr = 0.19), and asymmetry indices (Δr > 0.16). Smaller improvements were observed for fiber entropy length, variability and for skew/kurtosis/gap statistics (Δr=0.07-0.11). Pix2pix correlations surpassed diffusion correlations in only 10% of features; primarily gap fiber density features (Δr ≤ 0.05). Discussion: This study demonstrates the feasibility of generating vPSR images from routine H&E slides to infer collagen architecture with high fidelity. Broader application and refinement across larger cohorts will clarify how collagen architecture shapes tumor behavior, recurrence risk, and patient outcomes, supporting further spatial biomarker development.
利益披露 Disclosure
H. Kaur, None.. M. Le, None.. A. Gertych, None.. M. Guindi, None.. A. Gangi, None.. K. Coleman, None.. J. C. Figueiredo, None.. X. Liu, None.. L. J. Vaickus, None.. K. Yao, None.. K. S. Lau, None.. J. J. Levy, None.

← 返回 AACR 2026 检索