PO.BCS02.06 · 生物信息与计算

利用Sysmex XN血液分析仪数据对肝病患者克隆性造血进行基于AI的预筛查

AI-based prescreening of clonal hematopoiesis in patients with liver disease using Sysmex XN hematology analyzer data

海报缩略图:利用Sysmex XN血液分析仪数据对肝病患者克隆性造血进行基于AI的预筛查
编号 4223 展板 19 时间 4/21 09:00–12:00 区域 Section 5 主讲 Jeongmin Park, BS
分会场 Machine Learning Approaches for Cancer Prediction
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作者与单位 Authors & Affiliations

Jeongmin Park1, Dahyun Kim1, Ja Min Byun2, Hyunsoo Cho2, Eun Ju Cho2, Youngil Koh2

1Cancer Research Institute, Seoul National University College of Medicine, Seoul, Korea, Republic of,2Seoul National University Hospital, Seoul, Korea, Republic of

摘要 Abstract

中文摘要
克隆性造血(CH)的特征是携带体细胞突变的血细胞发生克隆性扩增,常见于衰老过程中。尽管已知CH会引起血象改变,但仅凭标准全血细胞计数(CBC)指标来区分它具有挑战性,凸显出对多维血液学分析的需求。为此,本研究利用Sysmex XN分析仪的扩展CBC参数,纳入更广泛的光学测量,以探讨它们是否能改善CH检测。鉴于既往有证据将CH与肝脏病理联系起来,本研究聚焦于CH与肝病之间的关系。二者之间的关联已在诸如UK Biobank等大规模队列中得到证实,且CH驱动的巨噬细胞活化被认为与NAFLD、NASH、肝硬化和肝细胞癌的进展相关。然而,肝病——包括肝硬化——会产生特征性的CBC改变,使CH的区分尤为困难。这促使我们评估AI模型能否在肝病所致血液学改变的情况下检测出CH相关信号。在Seoul National University Hospital,在Sysmex的支持下,自2022年起前瞻性地存档了XN分析仪的原始输出,涵盖146个参数,包括可报告项目和研究指数。利用这些数据,采用多种机器学习和深度学习方法分析了来自303例肝病患者的2,173份CBC。初始模型在每位患者的首次检测数据上进行训练。为捕获CH的纵向动态,从每位患者的所有重复检测中重构特征(均值、标准差、最大值、最小值),并开发了一个结合逻辑回归、LightGBM和CatBoost的软投票集成模型,取得了稳定的性能。应用了深度学习MIL模型来聚合跨患者时间点的重复CBC测量并捕获实例级贡献,辅以自编码器将相关特征压缩为潜在聚类以提高模型稳定性。仅使用首次就诊数据时,逻辑回归取得精确率41.0%、召回率51.6%、F1 0.457;CatBoost取得精确率39.2%、召回率93.5%、F1 0.552。当使用汇总统计量与软投票模型时,性能提升至精确率72.2%、召回率80.0%、F1 0.759。在MIL框架内,对模型加权实例的分析揭示了自编码器衍生的潜在聚类中与肝病相关的独特激活模式,提供了超越传统特征重要性分析的新颖可解释性视角。该算法为从肝病患者的CBC数据中识别CH提供了实用指导,能够在精准诊断之前进行预筛查,并支持及时诊断和改善管理。
查看英文原文 English abstract
Clonal hematopoiesis (CH) is characterized by the clonal expansion of blood cells harboring somatic mutations and is commonly observed with aging. Although CH is known to induce hemogram alterations, differentiating it using standard complete blood count (CBC) metrics alone is challenging, highlighting the need for multidimensional hematologic profiling. To address this, this study leverages expanded CBC parameters from the Sysmex XN analyzer, incorporating broader optical measurements, to explore whether they improve CH detection. Given prior evidence linking CH to liver pathology, this study focuses on the relationship between CH and liver disease. Associations between the two have been demonstrated in large-scale cohorts such as the UK Biobank, and CH-driven macrophage activation has been implicated in the progression of NAFLD, NASH, cirrhosis, and hepatocellular carcinoma. However, liver diseases-including cirrhosis-produce characteristic CBC alterations, making CH discrimination particularly difficult. This motivates evaluating whether an AI model can detect CH-related signals despite liver disease-induced hematologic changes. At Seoul National University Hospital, with support from Sysmex, raw outputs from XN analyzers have been prospectively archived since 2022, covering 146 parameters, including reportable items and research indices. Using these data, 2,173 CBCs from 303 patients with liver diseases were analyzed using diverse machine- and deep-learning methods. Initial models were trained on the first test data per patient. To capture the longitudinal dynamics of CH, features were reconstructed from all repeated tests per patient (mean, standard deviation, maximum, minimum), and a soft-voting ensemble combining logistic regression, LightGBM, and CatBoost was developed, yielding stable performance. A deep-learning MIL model was applied to aggregate repeated CBC measurements across patient time points and capture instance-level contributions, complemented by an autoencoder to compress correlated features into latent clusters and improve model stability. With first-visit data only, logistic regression achieved precision 41.0%, recall 51.6%, F1 0.457; CatBoost achieved precision 39.2%, recall 93.5%, F1 0.552. When summary statistics with soft voting model were used, performance improved to precision 72.2%, recall 80.0%, F1 0.759. Within the MIL framework, analysis of model-weighted instances revealed distinct activation patterns in autoencoder-derived latent clusters associated with liver diseases, offering a novel interpretability perspective beyond traditional feature-importance analysis. This algorithm provides practical guidance to identify CH from CBC data in patients with liver disease, enabling prescreening prior to precision diagnostics and supporting timely diagnosis and improved management.
利益披露 Disclosure
J. Park, None.. D. Kim, None.. J. Byun, None.. H. Cho, None.. E. Cho, None.. Y. Koh, None.

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