PO.BCS02.06 · 生物信息与计算
在新诊断慢性淋巴细胞白血病(CLL)患者中验证CLL治疗感染模型(CLL-TIM)
Validation of the CLL treatment infection model (CLL-TIM) in patients with newly diagnosed chronic lymphocytic leukemia (CLL)
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
CLL国际预后指数(CLL-IPI)和早期CLL国际预后评分(IPS-E)等预后指标可预测早期CLL患者的首次治疗时间(TTFT)。它们预测感染风险(CLL发病和死亡的主要促成因素)的能力仍不确定。CLL-TIM是一个在欧洲开发的机器学习模型,它整合临床、实验室和感染相关数据,以预测诊断后2年内的TTFT或感染风险,受试者工作特征曲线下面积(ROC-AUC)为0.74;Agius等,Nat Comm 11, 363, 2020。我们在美国新诊断CLL患者队列中首次对CLL-TIM进行验证,并将其性能与CLL-IPI和IPS-E指标进行比较。通过罗切斯特流行病学项目使用国际疾病分类(ICD)编码识别新诊断CLL(2000-2020)的成人患者;所有诊断均经确认。我们复现了原始CLL-TIM模型的变量选择并将其应用于我们的队列。主要终点为TTFT或新发感染(定义为进行血培养)二者之一的2年复合终点。模型性能采用与原始CLL-TIM方法一致的ROC-AUC进行评估。CLL-IPI和IPS-E的性能采用时间依赖性ROC-AUC评估;判别力的成对差异采用DeLong检验。我们识别出454例CLL患者,中位年龄72岁[范围30-97],166例(37%)为女性,399例(92%)患者的Rai分期为0-II。130/305例(42%)患者IGHV基因未突变,24/329例(8%)患者存在TP53破坏(FISH检测del17p或TP53突变)。在2年时,55例(12%)患者接受了CLL治疗,56例(12%)患者发生感染。94例(21%)患者出现2年复合终点。CLL-TIM的ROC-AUC为0.74(95% CI 0.68-0.80),CLL-IPI为0.69(95% CI 0.63-0.75,与CLL-TIM相比p=0.11),IPS-E为0.68(95% CI 0.62-0.74,与CLL-TIM相比p=0.02)。我们还使用所有预后模型对每个单独终点评估了ROC-AUC。CLL-TIM、CLL-IPI和IPS-E在2年TTFT的相应ROC-AUC分别为0.79、0.74和0.76;在2年感染的相应ROC-AUC分别为0.68、0.57和0.52。这是CLL-TIM在美国新诊断CLL患者队列中的首次验证。尽管CLL-TIM模型在个体患者层面的风险预测上超过了最低有意义判别阈值(AUC>0.7),但CLL-TIM与CLL-IPI之间的AUC无统计学差异,提示两种模型均可预测2年复合终点。观察到的判别力大多由TTFT预测而非感染预测驱动,凸显了为新诊断CLL开发更具感染特异性风险模型的必要性。
查看英文原文 English abstract
Prognostic indices such as the CLL International Prognostic Index (CLL-IPI) and the International Prognostic Score for Early-stage CLL (IPS-E) can predict time to first treatment (TTFT) in patients with early-stage CLL. Their ability to predict risk of infection - a leading contributor to morbidity and mortality in CLL - remains uncertain. The CLL-TIM is a machine-learning model developed in Europe that integrates clinical, laboratory, and infection-related data to predict TTFT or infection risk within 2-years of diagnosis, Receiver Operating Characteristic - Area Under the Curve (ROC-AUC) 0.74; Agius et al., Nat Comm 11, 363 2020. We conducted the first validation of CLL-TIM in a US cohort of newly diagnosed CLL patients and compared its performance with the CLL-IPI and IPS-E indices. Adults with newly diagnosed CLL (2000-2020) were identified through the Rochester Epidemiology Project using International Classification of Disease (ICD) codes; all diagnoses were confirmed. We replicated the variable selection from the original CLL-TIM model and applied it to our cohort. The primary endpoint was a 2-year composite of either TTFT or incident infection (defined as having blood cultures drawn). Model performance was evaluated using ROC-AUC consistent with the original CLL-TIM methods. CLL-IPI and IPS-E performance was assessed using time-dependent ROC-AUC; pairwise differences in discrimination were tested using DeLong. We identified 454 CLL patients with a median age of 72 years [range, 30-97], 166 (37%) were female, Rai Stage was 0-II in 399 (92%) patients. IGHV genes were unmutated in 130/305 (42%) patients and TP53 disruption (either del17p by FISH or TP53 mutation) was present in 24/329 (8%) patients. At 2-years, 55 (12%) patients received CLL therapy, and 56 (12%) patients had an infection. The 2-year composite endpoint was observed in 94 (21%) patients. The ROC-AUC was 0.74 (95% CI 0.68-0.80) for CLL-TIM, 0.69 for CLL-IPI (95% CI 0.63-0.75, p=0.11 compared to CLL-TIM) , and 0.68 for IPS-E (95% CI 0.62-0.74, p=0.02 compared to CLL-TIM). We also evaluated the ROC-AUC using all the prognostic models for each individual endpoints. The corresponding ROC-AUC for TTFT at 2 years were 0.79, 0.74, and 0.76 for CLL-TIM, CLL-IPI, and IPS-E, respectively; and for infection at 2 years were 0.68, 0.57, and 0.52, respectively. This is the first validation of the CLL-TIM in a US-based cohort of newly diagnosed CLL patients. Although the CLL-TIM model exceeded the minimally meaningful discrimination threshold (AUC >0.7) for individual patient-level risk prediction, there was no statistical difference in AUC between CLL-TIM and CLL-IPI, suggesting either model can predict the composite endpoint at 2 years. Most of the observed discrimination was driven by prediction of TTFT rather than infection, underscoring the need to develop more infection-specific risk models for newly diagnosed CLL.
利益披露 Disclosure
R. Mwangi, None..
T. D. Shanafelt, None..
S. Basnet, None..
E. L. West, None..
O. Keegan, None..
T. G. Call, None..
Y. Yuan, None..
B. A. Vallejo, None..
P. J. Hampel, None..
L. E. Roeker, None..
S. J. Achenbach, None..
A. D. Norman, None..
K. G. Rabe, None..
N. E. Kay, None..
J. R. Cerhan, None..
C. A. Hanson, None..
S. L. Slager, None..
S. A. Parikh, None.