PO.ET09.01 · 实验与分子治疗
IDE892是一种高效、高选择性的PRMT5抑制剂,具有MTA阳性和SAM阴性协同性,经优化用于在MTAPdel癌症中与变构MAT2A抑制剂IDE397联用开发
IDE892 is a highly potent and selective PRMT5 inhibitor, with MTA-positive and SAM-negative cooperativity, optimized for development in MTAPdel cancers in combination with the allosteric MAT2A inhibitor IDE397
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
在人类癌症中,MTAP纯合缺失常与9p21.3染色体上相邻的CDKN2A抑癌基因共同发生。MTAP活性缺失导致对MAT2A(SAM合成的限速酶)产生急性依赖,以产生足够的SAM来克服MTA对PRMT5的抑制,并通过一碳代谢支持叶酸循环。针对这一脆弱性的治疗概念验证已通过对MAT2A的变构抑制或对PRMT5的MTA协同型抑制得以实现。然而,反应的差异性凸显了通过联合治疗策略继续改善疗效的机遇。临床前分析表明,肿瘤细胞中MTA蓄积的程度以及内在或获得性耐药机制是抗肿瘤活性的关键决定因素。值得注意的是,合理设计的MAT2A和PRMT5抑制剂联合给药,可在多个对任一单药治疗均难治的MTAPdel PDX模型中实现持久的肿瘤消退和完全缓解。在此,我们描述了IDE892的生化、细胞生物学及体内疗效特征,这是一种专门设计用于利用PRMT5和MAT2A联合抑制相关治疗机遇的MTA协同型PRMT5抑制剂。对IDE397的MAT2A抑制模式进行的广泛生物物理和生化表征,产生了一个机制模型,该模型解释了IDE397对MTAPdel肿瘤的特异性活性——这归因于变构依赖性地保留了基础MAT2A活性,使SAM水平维持在维持正常组织功能所需阈值之上。此外,对PRMT5上代谢物和抑制剂交换的动力学及平衡结合参数的广泛评估揭示了关键关系,这些关系决定了MTA协同性以及相对于apo状态而言对SAM结合状态的缓慢结合动力学(负协同性)。这些发现为IDE892的设计提供了信息,该设计优化了与MAT2A变构抑制联用时的疗效和耐受性。IDE892对MTA-PRMT5复合物相对于SAM-PRMT5复合物表现出至少1400倍的选择性结合(通过SPR测定),并在体内外对MTAPdel特异性PRMT5通路产生强效抑制。全转录组、蛋白质组及mRNA/tRNA甲基化组分析表明,IDE397和IDE892对MTAPdel细胞系统的扰动既有共同贡献也有各自不同的贡献,这转化为在MTAPdel CDX和PDX模型中稳健的联合获益。这些临床前研究表明,IDE892/IDE397联合具有为携带MTAPdel肿瘤的患者提供持久治疗活性的潜力;该机遇目前正在1期临床试验中评估。
查看英文原文 English abstract
Homozygous deletion of MTAP frequently co-occurs with the adjacent CDKN2A tumor suppressor on chromosome 9p21.3 in human cancers. Loss of MTAP activity creates an acute dependency on MAT2A, the rate-limiting enzyme for SAM synthesis, to produce sufficient SAM to overcome MTA suppression of PRMT5 and to support the folate cycle via 1-carbon metabolism. Proof-of-concept therapeutic targeting of this vulnerability has been achieved by allosteric inhibition of MAT2A or by MTA-cooperative inhibition of PRMT5. However, variability of response highlights the opportunity to continue to improve outcomes with combination therapy strategies. Preclinical profiling has indicated the extent of MTA accumulation in tumor cells and intrinsic or acquired resistance mechanisms are key determinants of antitumor activity. Notably, co-administration of appropriately designed MAT2A and PRMT5 inhibitors can deliver durable tumor regressions and complete responses in multiple MTAPdel PDX models recalcitrant to either monotherapy. Here we describe the biochemical, cell biological, and in vivo efficacy profiles of IDE892, an MTA-cooperative PRMT5 inhibitor purposely designed to exploit the therapeutic opportunity associated with combined inhibition of PRMT5 and MAT2A. Extensive biophysical and biochemical characterization of the IDE397 mode-of-inhibition of MAT2A yielded a mechanistic model that accounts for MTAPdel tumor-specific activity of IDE397 due to allostery-dependent preservation of basal MAT2A activity, maintaining SAM levels above the threshold required to sustain function in normal tissues. In addition, extensive evaluation of the kinetic and equilibrium binding parameters of metabolite and inhibitor exchange on PRMT5 revealed key relationships that specify MTA-cooperativity as well as slow on-rate binding kinetics to the SAM-bound state (negative cooperativity) relative to the apo state. These findings informed the design of IDE892 that optimized efficacy and tolerability in combination with allosteric inhibition of MAT2A. IDE892 demonstrated at least 1,400-fold selective binding to MTA-PRMT5 versus SAM-PRMT5 complexes (by SPR) and robust MTAPdel-specific PRMT5 pathway inhibition in vitro and in vivo. Whole transcriptome, proteome, and mRNA/tRNA methylome analyses indicated both shared and distinct contributions of IDE397 and IDE892 to perturbation of MTAPdel cellular systems which translated to robust combination benefit in MTAPdel CDX and PDX models. These preclinical studies indicate that the combination of IDE892/IDE397 has the potential to deliver durable therapeutic activity for patients harboring MTAPdel tumors; an opportunity that is currently under evaluation in phase 1 clinical trials.
利益披露 Disclosure
A. A. Rao,
Ideaya Biosciences Employment, Stock Option.
M. M. Fischer,
Ideaya Biosciences Employment, Stock Option.
R. M. Choy,
Ideaya Biosciences Employment, Stock Option.
A. M. Gonzalez-Sanchez,
Ideaya Biosciences Employment.
N. Bresnahan,
Ideaya Biosciences Employment, Stock Option.
Z. Fang,
Ideaya Biosciences Employment.
M. J. Appel,
Ideaya Biosciences Employment, Stock Option.
A. Rathore,
Ideaya Biosciences Employment, Stock Option.
O. Aubi,
Ideaya Biosciences Employment, Stock Option.
S. Faris,
Ideaya Biosciences Employment.
P. Y. Jameson,
Ideaya Biosciences Employment, Stock Option.
Z. Roland,
Ideaya Biosciences Employment, Stock Option.
D. Trinh,
Ideaya Biosciences Employment.
K. Trego,
Ideaya Biosciences Employment, Stock Option.
J. Vivian,
Ideaya Biosciences Employment.
M. E. Dalziel,
Ideaya Biosciences Employment, Stock Option.
C. R. Frey,
Ideaya Biosciences Employment, Stock Option.
Y. Bai,
Ideaya Biosciences Employment, Stock Option.
J. Sachdev,
Ideaya Biosciences Employment, Stock Option.
C. L. Neilan,
Ideaya Biosciences Employment, Stock Option.
J. Jain,
Ideaya Biosciences Employment, Stock Option.
M. A. White,
Ideaya Biosciences Employment, Stock Option.
P. A. Barsanti,
Ideaya Biosciences Employment, Stock Option.
P. Teriete,
Ideaya Biosciences Employment, Stock Option.
M. Fleury,
Ideaya Biosciences Employment, Stock Option.