PO.ET09.07 · 实验与分子治疗

D3S-003:一种口服生物利用度良好的强效选择性双状态抑制剂,同时靶向GDP结合型和GTP结合型KRAS G12D

D3S-003, an orally bioavailable potent and selective dual-state inhibitor targeting both GDP- and GTP-bound KRAS G12D

海报缩略图:D3S-003:一种口服生物利用度良好的强效选择性双状态抑制剂,同时靶向GDP结合型和GTP结合型KRAS G12D
编号 4569 展板 12 时间 4/21 09:00–12:00 区域 Section 17 主讲 Jing Zhang, PhD
分会场 Novel Antitumor Agents 2
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作者与单位 Authors & Affiliations

Jing Zhang1, Tienan Wang1, Robert A. Mook Jr.2, Haibo Xie1, Shaonan Wang1, Zhiqiang Zheng1, Xin Xiong1, Hui Wang1, Zhi Jian Chen1

1D3 Bio, Inc., Shanghai, China,2Department of Medicine, Duke University Medical Center, Durham, NC

摘要 Abstract

中文摘要
KRAS G12D是人类癌症中最常见的KRAS突变,代表了一个极具吸引力却又充满挑战的致癌靶点。与KRAS G12C相比,KRAS G12D的内在水解速率显著较慢,导致其活性(GTP结合)状态更为持久,从而限制了GDP状态抑制剂的疗效。为应对这一挑战,我们通过分子动力学和基于共晶体的SAR探究指导下的深入优化,鉴定了D3S-003,这是一种强效选择性小分子抑制剂,同时靶向KRAS G12D的GDP结合(OFF)形式和GTP结合(ON)形式。在SPR结合分析中,D3S-003对GDP结合型和GTP结合型KRAS G12D均具有亚纳摩尔亲和力,在GDP结合形式上的靶点驻留半衰期超过13小时,这是实现类共价抑制的关键特征。在生化分析中,D3S-003抑制GDP结合型KRAS G12D的核苷酸交换,并以个位数纳摩尔IC50值破坏GTP结合型KRAS G12D-cRAF相互作用,验证了其双状态分子作用机制。在细胞分析中,D3S-003在一组KRAS G12D突变型细胞系中的p-ERK抑制和增殖抑制方面均表现出纳摩尔IC50抑制作用,同时保持对KRAS非G12D细胞系的高选择性。值得注意的是,与目前处于临床试验中的在研KRAS G12D(ON)抑制剂RMC-9805相比,D3S-003表现出更佳的效力和选择性。D3S-003具有理想的成药性、在多个临床前物种中的口服生物利用度以及稳健的GLP安全性特征。在体内研究中,它在KRAS G12D驱动的HPAC胰腺癌异种移植中表现出强效的抗肿瘤活性,仅需17.5 nM·h和56 nM·h的游离药物AUC即可分别实现30%的肿瘤消退(PR)和100%的完全缓解(CR)。在一系列具有KRAS G12D突变和多样遗传背景的NSCLC和胰腺癌PDX和CDX模型中,D3S-003实现了70%的总体缓解率(ORR),表明其在这些肿瘤类型中具有广泛的疗效。总之,这些发现凸显了D3S-003作为一种强效选择性KRAS G12D双状态抑制剂的强大转化潜力。目前正在计划开展一项1期首次人体(FIH)研究。
查看英文原文 English abstract
KRAS G12D is the most prevalent KRAS mutation in human cancers and represents a highly attractive yet challenging oncogenic target. Compared with KRAS G12C, the intrinsic hydrolysis rate of KRAS G12D is significantly slower, resulting in a more persistent active (GTP-bound) state that limits the efficacy of GDP-state inhibitors. To address this challenge, we identified D3S-003, a potent and selective small-molecule inhibitor that targets both the GDP-bound (OFF) and GTP-bound (ON) forms of KRAS G12D through intensive optimization guided by molecular dynamics and co-crystal-based SAR interrogation. In SPR binding assays, D3S-003 sub-nanomolar affinity for both GDP-bound and GTP-bound KRAS G12D, with a target residence half-life exceeding 13 hours on the GDP-bound form, a key feature enabling a covalent-like inhibition. In biochemical assays, D3S-003 inhibited GDP-bound KRAS G12D nucleotide exchange and disrupted GTP-bound KRAS G12D-cRAF interaction with single-digit nanomolar IC₅₀ values, validating its dual-state molecular mechanism of action. In cellular assays, D3S-003 demonstrated nanomolar IC₅₀ inhibition in both p-ERK inhibition and proliferation across a panel of KRAS G12D-mutant cell lines, while maintaining high selectivity over KRAS non-G12D lines. Notably, D3S-003 showed improved potency and selectivity compared with RMC-9805, an investigational KRAS G12D (ON) inhibitor currently in clinical trials. D3S-003 exhibits desirable drug-like properties, oral bioavailability across multiple preclinical species, and a robust GLP safety profile. In i n vivo studies, it demonstrated robust antitumor activity in KRAS G12D-driven HPAC pancreatic cancer xenografts, requiring only 17.5 nM·h and 56 nM·h free drug AUC to achieve 30% tumor regression (PR) and 100% complete remission (CR), respectively. Across a broad panel of PDX and CDX models of NSCLC and pancreatic cancer with KRAS G12D mutations and diverse genetic backgrounds, D3S-003 achieved a 70% overall response rate (ORR), indicating broad efficacy across these tumor types. Together, these findings highlight D3S-003 as a potent and selective KRAS G12D dual-state inhibitor with strong translational potential. A Phase 1 first-in-human (FIH) study is currently being planned.
利益披露 Disclosure
J. Zhang, D3 Bio, Inc. Employment. T. Wang, D3 Bio, Inc. Employment. R. A. Mook Jr., D3 Bio, Inc. Other, Robert A. Mook, Jr. is a consultant for D3 Bio and a professor at Duke University. This work was conducted independently of any of his government-funded research. H. Xie, D3 Bio, Inc. Employment. S. Wang, D3 Bio, Inc. Employment. Z. Zheng, D3 Bio, Inc. Employment. X. Xiong, D3 Bio, Inc. Employment. H. Wang, D3 Bio, Inc. Employment. Z. Chen, D3 Bio, Inc. Employment, g., Board of Directors, non-salaried role).

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