PO.ET09.04 · 实验与分子治疗

首创强效、选择性口服KAT6A降解剂开发候选药物PRT13722作为单药驱动完全的肿瘤消退,并具有改善的临床前血液学安全性特征

First-in-class potent and selective oral KAT6A degrader development candidate, PRT13722, drives complete tumor regressions as a monotherapy with an improved pre-clinical hematological safety profile

海报缩略图:首创强效、选择性口服KAT6A降解剂开发候选药物PRT13722作为单药驱动完全的肿瘤消退,并具有改善的临床前血液学安全性特征
编号 5793 展板 20 时间 4/21 02:00–05:00 区域 Section 15 主讲 Jack Carter, PhD
分会场 Proximity-Induced Drug Discovery 2
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作者与单位 Authors & Affiliations

Monisha Sivakumar, Sarah Pawley, Corey Basch, Jimin Park, Justin Kurian, Anthony Reichelderfer, Yue Zou, Kirsten Gallagher, Miles Cowart, Joy Cote, Alexander Grego, Jessica Burtell, Amy Crossan, Michael Hulse, Anjana Agarwal, Arpita Mondal, Chun Chen, Vijay Devannah, Sina Rezazadeh, Quincy Lewis, Patrick Wen, Ken Ray, Raul Leal, Daniel Porreca, Ganfeng Cao, Neha Bhagwat, Shanthi Ganesan, Stefan Ruepp, Min Wang, Joseph Rager, Koichi Ito, Sandy Geeganage, Andrew Combs, Peggy Scherle, Andrew Buesking, Jack Carter

Prelude Therapeutics, Wilmington, DE

摘要 Abstract

中文摘要
KAT6A是MYST家族组蛋白乙酰转移酶的成员,在多种癌症类型中反复扩增,驱动癌细胞生长。靶向KAT6近期已在ER+/HER2-乳腺癌(BC)中获得临床验证,并正在3期试验中与氟维司群(FUL)联合评估。值得注意的是,MYST蛋白(如KAT6A/B、KAT7)共同调控正常造血,而当前的临床抑制剂除KAT6A外还共同靶向这些蛋白,导致剂量限制性中性粒细胞减少。此外,与抑制相比,KAT6A蛋白降解已被证明能驱动差异化的生物学效应,并比KAT6A/B抑制剂具有更深的疗效。为了解决中性粒细胞减少的临床发生率并改善疗效,我们力求鉴定不影响KAT6B的KAT6A异双功能降解剂。利用基于结构的药物设计,我们设计出首个已知的双价靶向蛋白降解剂(TPD),能够强效且选择性地降解KAT6A而非KAT6B。对ADME和理化性质的进一步优化,产生了我们口服生物利用度良好的KAT6A选择性降解剂开发候选药物PRT13722。PRT13722(±)是一种皮摩尔级的KAT6A降解剂,对KAT6B具有极佳的选择性(D MAX <5%),且跨物种口服生物利用度高。全局蛋白质组学和新底物分析证实了PRT13722(±)的选择性,包括对其他MYST蛋白的选择性。尽管不降解KAT6B,我们观察到PRT13722(±)在T47D ER+ BC细胞中表现出优于KAT6A/Bi(E MAX 43%)的抗增殖活性(E MAX 95%),且疗效广度良好。与抑制剂不同,PRT13722破坏了KAT6A复合物,驱动全局致癌基因表达(如ESR1、PGR、MYC)的更深抑制。在众多ER+ BC异种移植模型中,PRT13722(±)以较低的口服每日剂量(<5 mg/kg)作为单药安全地驱动了深度且完全的肿瘤消退(如T47D TGI = 101%),不同于临床KAT6A/Bi加FUL(T47D TGI = 71%)。重复给药的体内PD研究表明,在有效剂量下KAT6A显著降解(>84%)且无KAT6B降解。接受PRT13722(±)治疗的小鼠中性粒细胞计数高于接受临床暴露量KAT6A/Bi治疗的小鼠。这些发现有望通过减少与CDK4/6i等其他治疗药物重叠的毒性,解决KAT6A/Bi的一项临床局限。事实上,PRT13722在体外和体内均表现出与CDK4/6i、PI3Ki和内分泌疗法(ET)的可联合性,同时在CDK4/6i和ET耐药以及ESR1/PIK3CA突变模型中保持活性。总之,我们首创的强效、选择性口服KAT6A降解剂PRT13722,相较于某些经临床验证的KAT6A/B双重抑制剂,展现出改善的疗效以及减少脱靶中性粒细胞减少的潜力。PRT13722的IND申报有望于2026年年中如期进行。
查看英文原文 English abstract
KAT6A is a member of the MYST family of histone acetyltransferases and is recurrently amplified in multiple cancer types, driving cancer cell growth. Targeting KAT6 has recently been clinically validated in ER+/HER2- breast cancer (BC) and is being evaluated in Phase 3 trials in combination with fulvestrant (FUL). Notably, MYST proteins (e.g. KAT6A/B, KAT7) co-regulate normal hematopoiesis and current clinical inhibitors co-target these proteins in addition to KAT6A, resulting in dose-limiting neutropenia. Further, KAT6A protein degradation has been shown to drive differential biology compared to inhibition and deeper efficacy than KAT6A/B inhibitors. With the goals of addressing the clinical incidence of neutropenia and improving efficacy, we sought to identify KAT6B-sparing KAT6A heterobifunctional degraders. Utilizing structure-based drug design, we engineered the first known bivalent TPDs to potently and selectively degrade KAT6A over KAT6B. Further optimization of the ADME and physicochemical properties provided our orally bioavailable KAT6A selective degrader development candidate, PRT13722. PRT13722(±) is a picomolar KAT6A degrader with exquisite selectivity over KAT6B (<5% D MAX ) and high oral bioavailability across species. Global proteomic and neosubstrate profiling confirmed the selectivity of PRT13722(±), including against other MYST proteins. Despite a lack of KAT6B degradation, we observed PRT13722(±) demonstrated superior (95% E MAX ) anti-proliferative activity in T47D ER+ BC cells compared to a KAT6A/Bi (43% E MAX ) and good breadth of efficacy. Unlike inhibitors, PRT13722 disrupted the KAT6A complex, driving deeper suppression of global oncogenic gene expression (e.g. ESR1 , PGR , MYC ). In numerous ER+ BC xenografts, PRT13722(±) safely drove deep and complete tumor regressions as a monotherapy (e.g. T47D TGI = 101%), unlike a clinical KAT6A/Bi plus FUL (T47D TGI = 71%), at low oral daily doses (<5 mg/kg). Repeat dose in vivo PD studies demonstrated robust KAT6A (>84%) and no KAT6B degradation at efficacious doses. Mice treated with PRT13722(±) had higher neutrophil counts than those treated with clinical exposures of a KAT6A/Bi. These findings potentially address a clinical limitation of KAT6A/Bi by reducing an overlapping toxicity with other therapeutic agents such as CDK4/6i. Indeed, PRT13722 demonstrated combinability in vitro and in vivo with CDK4/6i, PI3Ki, and endocrine therapies (ET), while maintaining activity in CDK4/6i- and ET-resistant, and ESR1 / PIK3CA mutant models. In summary, our first-in-class potent and selective oral KAT6A degrader, PRT13722, demonstrates improved efficacy and the potential for reduced off-target neutropenia compared to certain clinically validated KAT6A/B dual inhibitors. IND filing for PRT13722 is on track for mid-2026.
利益披露 Disclosure
M. Sivakumar, Prelude Therapeutics Employment, Stock Option. S. Pawley, Prelude Therapeutics Employment, Stock Option. C. Basch, Prelude Therapeutics Employment, Stock Option. J. Park, Prelude Therapeutics Employment, Stock Option. J. Kurian, Prelude Therapeutics Employment, Stock Option. A. Reichelderfer, Prelude Therapeutics Employment, Stock Option. Y. Zou, Prelude Therapeutics Employment, Stock Option. K. Gallagher, Prelude Therapeutics Employment, Stock Option. M. Cowart, Prelude Therapeutics Employment, Stock Option. J. Cote, Prelude Therapeutics Employment, Stock Option. A. Grego, Prelude Therapeutics Employment, Stock Option. J. Burtell, Prelude Therapeutics Employment, Stock Option. A. Crossan, Prelude Therapeutics Employment, Stock Option. M. Hulse, Prelude Therapeutics Employment, Stock Option. A. Agarwal, Prelude Therapeutics Employment, Stock Option. A. Mondal, Prelude Therapeutics Employment, Stock Option. C. Chen, Prelude Therapeutics Employment, Stock Option. V. Devannah, Prelude Therapeutics Employment, Stock Option. S. Rezazadeh, Prelude Therapeutics Employment, Stock Option. Q. Lewis, Prelude Therapeutics Employment, Stock Option. P. Wen, Prelude Therapeutics Employment, Stock Option. K. Ray, Prelude Therapeutics Employment, Stock Option. R. Leal, Prelude Therapeutics Employment, Stock Option. D. Porreca, Prelude Therapeutics Employment, Stock Option. G. Cao, Prelude Therapeutics Employment, Stock Option. N. Bhagwat, Prelude Therapeutics Employment, Stock Option. S. Ganesan, Prelude Therapeutics Employment, Stock Option. S. Ruepp, Prelude Therapeutics Employment, Stock Option. M. Wang, Prelude Therapeutics Employment, Stock Option. J. Rager, Prelude Therapeutics Employment, Stock Option. K. Ito, Prelude Therapeutics Employment, Stock Option. S. Geeganage, Prelude Therapeutics Employment, Stock Option. A. Combs, Prelude Therapeutics Employment, Stock Option. P. Scherle, Prelude Therapeutics Employment, Stock Option. A. Buesking, Prelude Therapeutics Employment, Stock Option. J. Carter, Prelude Therapeutics Employment, Stock, Stock Option.

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