PO.ET03.01 · 实验与分子治疗
EMT样重编程通过核糖体生物发生驱动套细胞淋巴瘤中耐药存留细胞的可塑性
EMT-like reprogramming drives drug-tolerant persister cell plasticity in mantle cell lymphoma via ribosome biogenesis
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
上皮-间充质转化(EMT)是一种进化上保守的发育程序,常在实体瘤中被利用以驱动转移和治疗耐药。类似的转录和代谢机制是否在血液肿瘤中运作,此前尚未探索。在此,我们首次证明,套细胞淋巴瘤(MCL,一种致死性非霍奇金淋巴瘤)中的耐药存留(DTP)细胞利用了一种不同于癌症干细胞通路的EMT样程序,以建立对BTK抑制剂(BTKi)和抗CD19 CAR T细胞治疗的稳定耐药。使用pirtobrutinib(一种临床批准的非共价BTKi),我们在MCL中建立了一个可重复的、非随机的DTP细胞模型。整合的RNA测序和超高分辨率代谢组学揭示,治疗压力触发了一种引人注目的形态发生转换:增殖性淋巴瘤细胞转变为增大的、静止的"巨细胞",其特征为深度去分化和B细胞身份(包括CD19)的丧失。撤药后,巨细胞迅速回复为增殖性、正常大小的子代,暴露出血液恶性肿瘤中此前未被认识的可逆可塑性。在机制上,DTP细胞通过启动苹果酸-天冬氨酸穿梭重构TCA循环,在药物暴露期间维持合成代谢。撤药则使TCA循环骤然转向分解代谢模式,为重新进入细胞周期提供燃料。这一代谢转换协调了全局转录组重编程并升高乙酰辅酶A(acetyl-CoA)水平,后者通过非组蛋白蛋白质乙酰化稳定核心EMT转录因子SNAI1。值得注意的是,乙酰化的SNAI1易位至核仁,驱动爆发性核糖体生物发生(以fibrillarin上调为标志)——这是上皮癌传统EMT中较少被研究的特征。干扰ATP-柠檬酸裂解酶(ACLi)、SNAI1或fibrillarin会破坏这一轴:ACLi/SNAI1阻断加速退出巨细胞状态,而fibrillarin缺失则将细胞困于静止状态,共同消除DTP可塑性并恢复治疗敏感性。在治疗难治性MCL患者中,DTP/巨细胞可动态大量存在——远超经典的微小残留病灶——并可通过免疫组化、代谢成像和单细胞RNA测序检测到。因此,与实体瘤中EMT主要促成侵袭不同,血液肿瘤重新利用这一古老的发育程序以实现代谢韧性和免疫逃逸。我们的工作确立了由代谢重编程和核仁SNAI1驱动的核糖体生物发生所协调的EMT样网络支配MCL中DTP细胞命运。靶向这一轴——尤其是核糖体生物发生——为根除存留细胞并克服对BTKi和CAR T细胞治疗的耐药提供了变革性策略。
查看英文原文 English abstract
Epithelial-mesenchymal transition (EMT) is an evolutionarily conserved developmental program frequently co-opted in solid tumors to drive metastasis and therapy resistance. Whether analogous transcriptional and metabolic machinery operates in blood cancers has remained unexplored. Here, we demonstrate-for the first time-that drug-tolerant persister (DTP) cells in mantle cell lymphoma (MCL), a lethal non-Hodgkin's lymphoma, exploit an EMT-like program distinct from cancer stem cell pathways to establish stable resistance to BTK inhibitors (BTKi) and anti-CD19 CAR T-cell therapy. Using pirtobrutinib (a clinically approved non-covalent BTKi), we established a reproducible, non-stochastic DTP cell model in MCL. Integrated RNA sequencing and ultra-high-resolution metabolomics revealed that therapeutic pressure triggers a striking morphogenetic switch: proliferative lymphoma cells transform into enlarged, quiescent “Giant cells” characterized by profound dedifferentiation and loss of B-cell identity (including CD19). Upon drug withdrawal, Giant cells rapidly revert to proliferative, normal-sized progeny, exposing a previously unrecognized reversible plasticity in hematologic malignancies. Mechanistically, DTP cells rewire the TCA cycle by engaging the malate-aspartate shuttle, sustaining anabolic metabolism during drug exposure. Drug removal abruptly shifts the TCA cycle to catabolic mode, fueling re-entry into cell cycles. This metabolic switch orchestrates global transcriptomic reprogramming and elevates acetyl-CoA levels, which stabilize the core EMT transcription factor SNAI1 via non-histone protein acetylation. Remarkably, acetylated SNAI1 translocates to nucleoli, driving explosive ribosome biogenesis (marked by fibrillarin upregulation)-a hallmark less studied in conventional EMT of epithelial cancers. Perturbing ATP-citrate lyase (ACLi), SNAI1, or fibrillarin disrupts this axis: ACLi/SNAI1 blockade accelerates exit from the Giant cell state, whereas fibrillarin loss traps cells in quiescence, collectively ablating DTP plasticity and restoring therapy sensitivity. In therapy-refractory MCL patients, DTP/Giant cells can be dynamically abundant-far exceeding classic minimal residual disease-and detectable by immunohistochemistry, metabolic imaging, and single-cell RNA sequencing. Thus, unlike solid tumors where EMT primarily enables invasion, blood cancers repurpose this ancient developmental program for metabolic resilience and immune evasion. Our work establishes that an EMT-like network, orchestrated by metabolic reprogramming and nucleolar SNAI1-driven ribosome biogenesis, governs DTP cell fate in MCL. Targeting this axis-particularly ribosome biogenesis-offers a transformative strategy to eradicate persister cells and overcome resistance to BTKi and CAR T-cell therapy.
利益披露 Disclosure
W. Wang, None..
Y. Liu, None..
H. Lee, None..
F. Yan, None..
Y. Fei, None..
Y. Li, None..
C. Yu, None..
L. Tan, None..
L. Phil, None..
Q. Cai, None..
L. Nie, None.
M. Wang,
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