Multi-Omics, Systems Biology, and Biological Mass Spectrometry

• 7647 · PDF Ecotype-guided multi-omics profiling identifies potential cell-surface therapeutic targets in gastric cancer Yuefan Wang, Lindsey K. Olsen, Hui Zhang, Bing Zhang, Clinical Proteomic Tumor Analysis Consortium (CPTAC)
• 7648 · PDF Plasma proteo-transcriptomic integration identifies molecular signatures and circulating biomarkers in ependymomas Rafat Malik, Ritu Kulshreshtha, Amandeep Kumar, Vaishali Suri, Mehar Chand Sharma
• 7649 · PDF Urinary arsenic speciation and metabolic indices associate with exposure chemistry and prostate cancer aggressiveness Sithembiso S. Msibi, MinJae Lee, Ping-Ching Hsu, L. Joseph Su
• 7650 · PDF High-resolution detection of post-translational modifications using single-molecule protein sequencing Natchanon Sittipongpittaya, Khanh (Kendrick) Dinh Quoc Nguyen, Andrey Reshetnyak, Muriel Priault, Ajay Vashisht, John Vieceli, Meredith Carpenter, Nidhi Sahni, Gloria Sheynkman
• 7652 Two-way proteogenomics identifies tumor-specific, immune-visible peptides for immunotherapy development in triple-negative breast cancer Moran Chen, Jong Min Choi, Zhiao Shi, Wenrong Chen, Bing Zhang
• 7653 · PDF Novel therapeutic opportunities in POU2F3 transcription factor-driven small cell lung cancer Lily L. R. Rix, Hayley D. Ackerman, Nicole R. Hackel, Xueli Li, Rachel Leigh O'Rourke, Juhyeon Son, Michelle A. Reiser, Arianna Nenci, Bin Fang, Eric A. Welsh, Brandon J. C. Klein, John M. Koomen, Eric B. Haura, Florian Karreth, Amanda Garner, Elsa R. Flores, Uwe Rix
• 7654 · PDF Unique oncogenic mechanisms of ultrahigh-frequency mutant PTEN R 130G in endometrial cancer Xiangyi Kong, Li Wang, Md Kamrul Hasan Khan, Jidong Wang, Huaijun Zhou, Xinyan Wu
• 7655 · PDF Defining molecular interfaces of glyco-immune checkpoint ligands using tandem mass spectrometry and ion-ion reactions Tim S. Veth, Haley M. Schramm, Nicholas M. Riley
• 7656 · PDF Comprehensive investigation of stool metaproteomes among patients with precancerous lesions and colorectal cancer Emmalee J. Northrop-Albrecht, Vinod K. Gupta, William R. Taylor, Jason P. Sinnwell, Doug W. Mahoney, Patrick H. Foote, Kelli N. Burger, Jaeyun Sung, John B. Kisiel
• 7657 · PDF An AFA assisted workflow for mass-spectrometry based proteomics of FFPE samples Dong-Gi Mun, Kiran Mangalaparthi, Daigo Gunji, Amy J. French, Raghavendra Pasupuleti, Cristine Charlesworth, Sameer Vasantgadkar, DEB BHATTACHARYYA, Akhilesh Pandey
• 7658 Mapping mutation-specific interaction and signalling networks across FGFR1-4 to understand cancer-associated rewiring Iftekhar Mahmud Chowdhury, Xiaonan Liu, Markku Varjosalo
• 7660 Altered cell surface N-glycosylation implicates hypersialylation in breast cancer brain metastasis Judith Nwaiwu, Wenjing Peng, Akhila Reddy, Xue Dong, Parisa Ahmadi, Jingfu Zhao, Yifan Huang, Peilin Jiang, Waziha Purba, Oluwatosin Daramola, Yehia Mechref
• 7661 · PDF Integrated multiomics profiling of lysates using nCounter® protein and RNA panels for comprehensive oncology insights Brian Filanoski, Lori Hamanishi, Giang Ong, Terence C. Theisen, Erin Piazza, Christina Bailey, Prajan Divakar, Margaret L. Hoang, Joseph M. Beechem
• 7662 A high-throughput, automated, and reproducible mIF workflow for spatial biology enabled by ZEISS slide stream and Vizgen's InSituPlex® assays Cassandra Kysilovsky, Kevin Hwang, Susanne Pfeifenbring, Michael Downing, Sherry Derakhshani, Moritz Widmaier, Jiang He, Angela Vasaturo
• 7663 · PDF Discovery of tumor-specific and neoantigenic peptides in cancer tissue samples using mass spectrometry-based immunopeptidomic Cameron Ellis, Arhur Viodé, Anamarija Pfeiffer, Lucy Yang, Monika Pepelnjak, George Rosenberger, Polina Shichkova, Kristina Marx, Christopher Below, Roland Bruderer
• 7664 · PDF An automated sequential protein/DNA/RNA extraction workflow for comprehensive multiomics analysis from cells and tissue Laure Jobert, Charmaine Hinahon, Leigh Foster, Marie Holter-Sørensen, Samri Michael, Iwona Grad, Lina Zheng, Berit Reed
• 7665 · PDF Multi-step antibody validation for nCounter high-plex multiomics panels Giang Ong, Terence C. Theisen, Brian Filanoski, Lori Hamanishi, Erin Piazza, Christina Bailey, Prajan Divakar, Margaret L. Hoang, Joseph M. Beechem
• 7666 · PDF Comprehensive surfaceome profiling reveals tumor specific targets in osteosarcoma Snehal D. Ganjave, Kevin K. Leung, Leanne C. Sayles, Alejandro Sweet-Cordero, James A. Wells
• 7667 · PDF Integrating multi-omics and AI-driven approaches into STEMM education to advance cancer research training Shixia Huang
• 7668 · PDF Characterization of outer membrane vesicles (OMVs) from pks+ NC101 and pks- DH10B E. coli strands Lissette Marie Perez-Rovira, Grace Enid Velez Crespo, Luis A. Prieto-Costas, Jeremy J. Colon-Morales, Abel Baerga-Ortiz
• 7669 · PDF Automated multiplex profiling of human cytokines and autoantibodies using an Automated Assay Workstation Wen-Rong Lie, Brooke Gilliam, Laura Marquardt, Mark Pawlicki, Ernest Mueller, Xiuyuan Zhang, Nathanael Ellis, Todd Hendrich, Linda Meeh, Scott Keefer, Qiang Xiao
• 7670 · PDF Integrated mass spectrometric workflows enabling next-generation conjugate therapeutics in cancer research Min Fang, Nilesh Sonawane, Wenchuan Ma, Benjamin Wei, Qingcong Lin
• 7671 · PDF Integrated proteogenomics of primary tumoroid models for precision oncology Shawn P. Fahl, Audrey Kleeman, Jessica Maxwell, Yukta Bhurke, Jessica Moore, Jaison Arivalagan, Kerri Colwell, Cavin Ott, Kayla Williams, Danielle Gutierrez
• 7672 Automated, flexible multiplex immunofluorescence for tumor microenvironment profiling using HCR™ Gold IF and clinically-relevant antibody clones Wudy Yang, Randy Chen, Harry Choi, Aneesh Acharya, Anne Hellebust, Will Howat
• 7673 9-channel spatial co-detection of clinically relevant protein and RNA targets in FFPE tumors with HCR™ Gold and MoxiePlex Wudy Yang, Randy Chen, Harry Choi, Aneesh Acharya, Minakshi Singh, Quyen Vu
• 7674 Formaldehyde-free fixation for safe, scalable and flexible single-cell multiomics studies Joseph Olives, Hongduan Huang, Zhiqi Zhang, Lin Chen, Rosary Nguyen, Hye-won Song, Aruna Ayer

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