Chromatin Structure and Function

• 1924 Retrotransposon reactivation to elicit innate immunity in squamous cancers while sparing normal tissues Mande Xue, Ying Lyu, Yejing Ge
• 1925 · PDF De novo enhancer formation at human-viral junctions drives hybrid extrachromosomal DNA amplification in HPV-associated cancer Takuya Nakagawa, Jens Luebeck, Kaiyuan Zhu, Sasik Roman, Brin Rosenthal, Kathleen Fisch, Toyoyuki Hanazawa, Atsushi Kaneda, Paul S. Mischel, Vineet Bafna, Joseph A. Califano
• 1926 The VPS72-H2A.Z-axis is an underappreciated oncogenic vulnerability in lung adenocarcinoma Xzaviar Kaymar Solone, Selim Reza, Kalpana Subedi, Nirmal Parajuli, Li Zhou, Qing-Sheng Mi
• 1927 · PDF Epigenetic CRISPR screen identifies chromatin regulators essential for ovarian cancer spheroid formation Deren Demirel Yavuz, Irem Durmaz Sahin
• 1928 · PDF SMARCB1-Mediated chromatin remodeling underlies sex differences in gliomagenesis Adham Halaoui, Najla Kfoury-Beaumont, Thomas Beaumont
• 1929 · PDF Stag2-cohesin mediates 3d genome dynamics to regulate MYCN driven oncogenic transcriptome in neuroblastoma. Jee-Youn Kang, Kaitlyn Tremble, Zhihui Liu, Carol J. Thiele
• 1930 · PDF Unveiling ecDNA spatial organization and epigenetic landscapes through long-read multi-omic sequencing and high-content microscopy Yanbo Wang, Xiaowei Yan, Natasha E. Weiser, Shu Zhang, Ivy Tsz-Lo Wong, Yung-Hsin Huang, Rui Li, Nicolas Altemose, Paul S. Mischel, Howard Y. Chang
• 1932 · PDF TIP-ChIP: Tagmented, indexed and pooled ChIP-seq to generate high-throughput, multi-sample results for low input samples Sarah Traynor, Shuxiong Wang, Shakiba Mahmoudi, Sumati Gonuguntla, Justin Cayford, Theresa K. Kelly, Brian Egan
• 1933 Pan-cancer 3D genomic analysis revealed extremely long Polycomb loops as the biomarker for sensitivity to Polycomb inhibition Zhong Fan, Sean Moran, Miriam Zanovello, Jie Liu, Chao Lu, Xiaotian Zhang
• 1934 · PDF The relationships between the stability of the +1 nucleosome and DNA superhelicity Peter Nanasi Jr., Laszlo Imre, Istvan Szatmari, Viktor Dombradi, Gabor Szabo
• 1936 · PDF Druggable dependency on histone demethylase LSD1 in MITF-low therapy resistant melanoma Shinichiro Kato, Anlun Xu, Hongyan Xie, Simone Sidoli, Genevieve Boland, Russel W. Jenkins, Dave S. B. Hoon, Hiroyoshi Nishikawa, David E. Fisher
• 1937 · PDF FOXK2⁺ malignant epithelial cells promote platinum resistance via KANSL1-MOF-mediated redox sustaining mechanism in ovarian cancer junzui li, Hao Huang, Yinu Wang, Didi Zha, Shannon Glynn, Ujin Kim, Jennifer Heo
• 1938 · PDF Epigenetic regulation of histone lysine demethylase 4B on cancer therapy in tamoxifen-sensitive and -resistant breast cancer cells Tian Zheng, Ju Ri Kim, Hyun Ji Noh, Hyung Sik Kim
• 1939 · PDF Oncogenic NSD2 drives Eph-ephrin signaling between myeloma and bone marrow stromal cells Austin Boese, Lindsey Rosas Togo, Qing Wu, Bethany Kaplan, Sungmi Park-Chouinard, Jonathan D. Licht, Ho Man Chan, Lisa Drew, Omid Tavana, Neeraj Aryal, Jessie Hao-Ru Hsu
• 1940 · PDF Dissecting the function of NSD1 in intestinal epithelium and inflammation Arum Kim, G Greg Wang
• 1941 · PDF KMT2D loss drives gastric cancer tumorigenesis through an RCOR3-dependent mechanism Liyong Zeng, Fang Cao, Calena J. Brown-Abel, Aryana S. Bhati, Bansi R. Vanparia, Melissa P. Pizzi, Yibo Fan, Gengyi Zou, Tanaya S. A. Washington, Johnson Amoah, Shay Patel, Arman Dhar, Elisha Deewan, Feng Yin, Yuan-Hung Lo, Min Gyu Lee, Jaffer A. Ajani, Shilpa S. Dhar
• 1942 · PDF MIRAGE: A ctDNA methylation-driven computational algorithm designed for sensitive detection of minimal residual disease Gowhar Shafi, Aarthi Ramesh, Sandhya Iyer, Aparna Sornapudi, Alain D'Souza, Sumit Halder, Bhagwat Jadhav, Sangeeta Prajapati, Mohan Uttarwar
• 1943 Epigenomic evolution during tumorigenesis in colorectal cancer Chang Hyun Nam, Yunah Lee, Yeonjin Kim, Hyein Won, Jinhee Ryu, Ji Won Park, Seung-Yong Jeong, Min Jung Kim, Young Seok Ju
• 1944 · PDF Hypermethylation of Sox21 masks its oncogenic role in glioblastoma Shu-Huei Hsiao, Jui-Ming Sun, Tun-Wu Wang, Yu-Wei Leu, and Shu-Huei Hsiao
• 1945 · PDF Epigenetic silencing of ESR1 in primary breast tumors from young women compared to those from older women: An integrative methylation and expression analysis Praveen Kumar Raj Kumar, Anupama Praveen Kumar, Mariano Russo, Jianfang Liu, Craig D. Shriver, Hai Hu, Xiaoying Lin

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