PO.CH03.01 · 化学
靶向ADAR1的干扰素诱导型异构体p150用于治疗口腔鳞状细胞癌(OSCC)
Targeting the interferon-inducible isoform, p150 of ADAR1 for the treatment of oral squamous cell carcinoma (OSCC)
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
口腔鳞状细胞癌(OSCC)是中低收入国家(LMIC)第四大常见癌症,也是亚洲癌症死亡的主要原因之一,占全球口腔癌死亡的近四分之三。五年生存率仍然低下,这既反映了可干预遗传驱动因素的稀缺,也反映了全球癌症数据集中缺乏亚洲患者来源模型。这种代表性不足减缓了针对承受最大疾病负担人群的治疗创新,留下了巨大的未满足临床需求。为弥合这一差距,我们对一组能够反映这些患者遗传和病因多样性的独特亚洲来源OSCC细胞系进行了全基因组CRISPR/Cas9依赖性筛选,以识别可用于治疗开发的脆弱点。我们鉴定出作用于RNA的腺苷脱氨酶(ADAR1)为OSCC存活所必需的基因。ADAR1是一种RNA编辑酶,其失调与多种癌症的肿瘤进展相关。ADAR1有两种异构体(p110和p150),二者除p150具有独特的Zalpha结构域外完全相同,该结构域结合Z-DNA,为治疗这一致命的OSCC提供了独特的靶向机会。为推进这项工作,我们应用了一种专有的计算机辅助药物发现流程,称为多层超大规模筛选与探索(M.U.S.E),以识别潜在的Zalpha靶向ADAR1抑制剂。约60亿个化合物通过整合的溶解度、类药性、结合亲和力和稳定性过滤器进行评估。经计算机模拟筛选共入围51个化合物,并评估了其结合亲和力和特异性。采用内源性色氨酸荧光(ITF)光谱法测定结合亲和力,采用电泳迁移率变动分析(EMSA)测定化合物在破坏Zalpha-Z-DNA结合方面的靶向效应。ITF分析表明,21个化合物表现出强结合亲和力,其Stern-Volmer常数(KSV)超过10,000 M-1。通过EMSA,我们鉴定出8个化合物具有破坏Zalpha-Z-DNA结合复合物的有力证据。与其他已报道的ADAR1抑制剂实验候选物相比,我们选定的顶级命中化合物在破坏ADAR1-Zalpha功能方面表现出更好的结合亲和力和靶向效力。尽管在OSCC细胞中进行命中至先导物优化及其抗肿瘤疗效验证的进一步工作仍在进行中,但这些具有经验证的结合亲和力和功能效力的顶级命中化合物的发现,为我们的药物发现策略保证了充满希望的前景。
查看英文原文 English abstract
Oral squamous cell carcinoma (OSCC) is the fourth most common cancer in low- and middle-income countries (LMIC) and is one of the leading causes of cancer deaths in Asia, accounting for nearly three-quarters of global oral cancer mortality. Five-year survival rates remain poor, reflecting both the scarcity of actionable genetic drivers and the absence of Asian patient-derived models in global cancer datasets. This underrepresentation has slowed therapeutic innovation for populations that bear the greatest burden, leaving a significant unmet clinical need. To address this gap, we conducted genome-wide CRISPR/Cas9 dependency screens on a panel of unique Asian-derived OSCC cell lines that reflect the genetic and etiological diversity of these patients to identify vulnerabilities for therapeutic development. We have identified Adenosine deaminase acting on RNA (ADAR1) as an essential gene for OSCC survival. ADAR1 is an RNA-editing enzyme, whereby its dysregulation has been associated with tumor progression in various cancers. There are two isoforms of ADAR1 (p110 and p150), which are identical except that p150 has a unique Zalpha domain, which binds Z-DNA and offers a unique targeting opportunity to treat this deadly OSCC. To take this forward, we applied a proprietary computer-aided drug discovery pipeline, termed the Multi-layer Ultra-large Screening and Exploration (M.U.S.E), to identify potential Zalpha-targeting ADAR1 inhibitors. Approximately six billion compounds were evaluated through integrated filters for solubility, drug-likeness, binding affinity, and stability. A total of 51 compounds were shortlisted from the in-silico screening, and their binding affinities and specificities were evaluated. The intrinsic tryptophan fluorescence (ITF) spectroscopy was used to determine the binding affinity, while the electrophoretic mobility shift assay (EMSA) was used to determine the on-target effect of the compounds in disrupting the Zalpha-Z-DNA binding. From ITF analysis, 21 compounds demonstrated strong binding affinity with Stern-Volmer constants (K SV ) exceeding 10,000 M -1 . Using EMSA, we identified eight compounds with robust evidence of disruption of Zalpha-Z-DNA binding complexes. Our selected top hits demonstrated better binding affinity and on-target efficacy in disrupting ADAR1-Zalpha function, compared to other reported experimental candidates of ADAR1 inhibitors. While further effort in the hit-to-lead optimization and validation of its anti-tumor efficacy in OSCC cells are still ongoing, the discovery of these top hits with validated binding affinity and functional efficacy assures a promising outlook of our drug discovery strategy.
利益披露 Disclosure
A. Chai, None..
P. Yee, None..
X. Chee, None..
S. Cheah, None..
J. Teo, None..
K. Yeong, None..
S. Ng, None..
S. Hwang, None..
S. Cheong, None.