PO.BCS01.11 · 生物信息与计算
实时多模态ctDNA与影像学评估助力HPV相关口咽癌的适应性治疗
Real time multimodal ctDNA and imaging assessment enables adaptive treatment in HPV related oropharyngeal cancer
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
目的:循环肿瘤DNA(ctDNA)已成为检测微小残留病灶的敏感生物标志物,但其在根治性治疗期间用于实时调整治疗的潜力仍未被探索。将ctDNA动态变化与影像学相结合,有望实现比单纯当前放射学监测更精确、更适应风险的治疗调整。HPV相关口咽癌(OPC)由于治愈率高、正积极开展治疗降级努力、且放化疗疗程较长可允许治疗中期调整,因此是一个理想的研究背景。我们试图确定纵向ctDNA分析与多模态MRI相结合是否能够为应答适应性治疗策略提供指导。
方法:共158例HPV OPC患者入组一项个体化降级试验(NCT03323463)。在治疗前及治疗期间每周采集血样用于ctDNA分析,在长达126周的时间内从119例患者中获得980份纵向样本(平均每例患者8.2份)。我们开发了一种双重个体化癌症监测(PCM)-HPV ctDNA检测方法,将患者特异性的肿瘤指导变异检测(平均每例患者47个变异)与靶向高危HPV亚型(尤其是HPV-16和HPV-18的E6和E7基因)的探针相结合,两者均采用锚定多重PCR(AMP)后进行高通量测序(Invitae,现为Labcorp,加利福尼亚州旧金山)。同时每周进行MRI(T2加权)以测定肿瘤体积。
结果:将体细胞突变与病毒ctDNA检测相结合,使基线ctDNA检出率从80.3%(仅HPV ctDNA)和89.4%(仅PCM ctDNA)提高至93.9%。基线循环HPV水平与肿瘤体积、凋亡信号、坏死及原发肿瘤病毒载量相关(合并R²=0.54)。在治疗期间,ctDNA表现出比体积影像学更宽的动态范围和更快的动力学。关键的是,治疗第2周的绝对ctDNA分数可预测需要治疗强化的患者(p=0.0003)。一个整合治疗中ctDNA评估与影像学的多模态模型改善了对高危疾病患者的识别,优于任何单一模态。
结论:治疗早期的ctDNA动态变化在适应治疗的关键窗口期捕获了侵袭性疾病生物学特征。分子与影像学评估的多模态整合提供了更优的风险分层,表明二者在治疗早期捕获了互补的生物学信息,并为实时治疗个体化建立了框架。
查看英文原文 English abstract
Purpose: Circulating tumor DNA (ctDNA) has emerged as a sensitive biomarker for minimal residual disease detection, but its potential for real-time adaptation during curative therapy remains unexplored. Integrating ctDNA dynamics with imaging could enable more precise, risk-adapted treatment modifications beyond current radiological monitoring alone. HPV-associated oropharyngeal cancer (OPC) presents an ideal context given high cure rates, active treatment de-escalation efforts, and protracted chemoradiation courses allowing mid-treatment adaptation. We sought to determine whether longitudinal ctDNA profiling integrated with multimodal MRI could inform response-adapted treatment strategies.
Methods: A total of 158 patients with HPV OPC were enrolled on a personalized de-escalation trial (NCT03323463). Blood samples for ctDNA analysis were collected pre-treatment and weekly during therapy, with 980 longitudinal samples obtained from 119 patients over up to 126 weeks (mean 8.2 samples/patient). We developed a dual Personalized Cancer Monitoring (PCM)-HPV ctDNA assay combining patient-specific tumor-informed variant detection (average 47 variants/patient) with probes targeting high-risk HPV subtypes, especially E6 and E7 genes of HPV-16 and HPV-18, both using anchored multiplex PCR (AMP) followed by high-throughput sequencing with Invitae (now Labcorp, San Francisco, CA). Weekly MRIs (T2-weighted) were performed concurrently to determine tumor volume.
Results: Integrating somatic mutations with viral ctDNA detection increased baseline ctDNA detection from 80.3% (HPV ctDNA only) and 89.4% (PCM ctDNA only) to 93.9%. Baseline circulating HPV levels correlated with tumor volume, apoptotic signaling, necrosis, and primary tumor viral load (combined R²=0.54). During treatment, ctDNA showed broader dynamic range and faster kinetics than volumetric imaging. Critically, absolute ctDNA fraction at week 2 of treatment predicted patients requiring treatment intensification (p=0.0003). A multimodal model integrating on-treatment ctDNA assessment and imaging improved identification of patients with high-risk disease, surpassing either modality alone.
Conclusions: Early on-treatment ctDNA dynamics capture aggressive disease biology during a critical window for adaptation. Multimodal integration of molecular and imaging assessments provides superior risk stratification, demonstrating that they capture complementary biology early in therapy and establishing a framework for real-time treatment personalization.
利益披露 Disclosure
B. H. Diplas, None..
D. N. Brown, None..
X. Pei, None..
Y. Zhu, None..
A. Shamseddine, None.
C. Graybill,
Labcorp/Invitae Employment, Stock, Other, Current/Former employee of Invitae (now a part of Labcorp).
W. Korn,
Labcorp Employment, Stock, Other, Current/Former employee of Invitae (now a part of Labcorp).
Biocartis Employment, Stock.
E. Westheimer,
Labcorp Employment, Other, Current/Former employee of Invitae (now a part of Labcorp).
L. G. Morris,
PGDX Patent.
R. J. Wong, None.
S. M. McBride,
Janssen Other, Consulting/Advisory.
AstraZeneca ), Consulting/Advisory.
Genentech ).
A. L. Ho,
Rgenta Stock.
Eisai Independent Contractor.
Merck Independent Contractor.
Ayala Pharmaceuticals Independent Contractor.
Prelude Therapeutics Independent Contractor.
Kura Oncology Independent Contractor.
AffyImmune Therapeutics Independent Contractor.
Exelixis Independent Contractor.
Cellestia Biotech Independent Contractor.
InxMed Independent Contractor.
Remix Therapeutics Independent Contractor.
Elevar Therapeutics Independent Contractor.
Coherus Biosciences Independent Contractor.
R. Daber,
Labcorp Employment, Stock.
N. Katabi, None.
J. Reis-Filho,
AstraZeneca Employment, Stock.
Repare Therapeutics Independent Contractor, Stock.
Paige.AI Independent Contractor, Stock.
B. Weigelt,
Repare Therapeutics ).
SAGA Diagnostics ).
N. Lee,
Merck Independent Contractor.
Mirati Therapeutics Independent Contractor.
Elsie Pharmaceuticals Independent Contractor.
Galera Therapeutics Independent Contractor.
Nanobiotix Independent Contractor.
Regeneron Independent Contractor.
Varian Medical Systems Travel.
N. Riaz,
Mirati Therapeutics Independent Contractor.
Repare Therapeutics Independent Contractor, ).
Illumina Independent Contractor.
Bristol Myers Squibb ).
Pfizer ).
Paige.AI ).
Varian Medical Systems Travel.