PO.MCB08.02 · 分子与细胞生物学
血管肉瘤细胞的全面基因组分析揭示RAS通路的广泛激活
Comprehensive genomic profiling of angiosarcoma cells reveals widespread activation of the RAS pathway
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
血管肉瘤是一组异质性的侵袭性血管恶性肿瘤,五年生存率为40%,半数患者的中位总生存期为16个月。这些肿瘤表现出高度的基因组复杂性,涵盖广泛的癌症相关突变,包括TP53、KDR、PTPRB、PIK3CA、NRAS和CDKN2A。尽管血管肉瘤在基因组和分子分析方面近期取得了进展,但针对这些遗传改变及其下游功能通路的有效疗法的开发一直受阻。这一局限可能归因于分子表征不完整以及临床前研究模型的匮乏。具体而言,可用的血管肉瘤细胞系数量极少,且其分子特征和功能特性仍未得到充分界定。这阻碍了稳健的临床前模型的建立以及可靠、有效药物靶点的发现。本研究旨在系统性地表征此前未被表征的血管肉瘤细胞系的遗传景观,以鉴定新的分子靶点并提出临床相关的治疗策略。首先,我们使用全外显子组测序和Oxford Nanopore测序,在一组血管肉瘤细胞系(AS5、ISO-HAS-B、HAMON、KU-CAS3和KU-CAS5)中建立了全面的基因组图谱,包括单核苷酸变异(SNV)、拷贝数变异(CNV)、DNA甲基化和基因表达模式。我们的整合分析鉴定出CDKN2A、PTPRB和RAS的改变,提示CDK4/6、TIE2/VEGFR2和RAS/MAPK可作为参与血管肉瘤细胞增殖和存活的潜在分子靶点。通过抗癌药物筛选,我们发现RAS抑制剂RMC-7977能有效抑制血管肉瘤细胞的生长。值得注意的是,RMC-7977对RAS突变型和野生型血管肉瘤细胞均有效,同时导致磷酸化ERK和磷酸化S6K水平的降低。此外,RAS信号通路在原发性血管肉瘤患者组织(n=13)中广泛激活,与RAS突变状态无关。这些数据提示RMC-7977能有效靶向在基因组复杂的血管肉瘤中由各种上游改变引起的广泛的、通路级别的RAS激活。我们正在进行的工作包括评估RMC-7977在携带突变型和野生型RAS的血管肉瘤异种移植模型中的体内疗效。此外,我们将通过评估RMC-7977对激活的RAS及下游信号的影响,剖析这种广泛的RAS依赖性背后的分子机制,从而进一步支持其在血管肉瘤中临床应用的理论依据。
查看英文原文 English abstract
Angiosarcomas are a heterogeneous group of an aggressive vascular malignancies, with a 40% five-year survival rate and a median overall survival of 16 months for half of patients. These tumors exhibit a high degree of genomic complexity, encompassing a broad spectrum of cancer-related mutations, including TP53 , KDR, PTPRB, PIK3CA, NRAS, and CDKN2A . Despite recent advances in genomic and molecular profiling in angiosarcomas, the development of effective therapies targeting these genetic alterations and their downstream functional pathways has been hampered. This limitation is possibly due to incomplete molecular characterization and the scarcity of preclinical research models. Specifically, only a small number of angiosarcoma cell lines are available, and their molecular features and functional properties remain incompletely defined. This hinders the development of robust preclinical models and the discovery of reliable, effective drug targets. The aim of this study is to systematically characterize the genetic landscape of previously uncharacterized angiosarcoma cell lines to identify novel molecular targets and propose clinically relevant therapeutic strategies. First, we established comprehensive genomic profiles, including single nucleotide variants (SNVs), copy number variation (CNV), DNA methylation, and gene expression patterns, across a panel of angiosarcoma cell lines (AS5, ISO-HAS-B, HAMON, KU-CAS3, and KU-CAS5) using Whole Exome Sequencing and Oxford Nanopore sequencing. Our integrated analysis identified alterations in CDNK2A , PTPRB , and RAS , suggesting CDK4/6, TIE2/VEGFR2, and RAS/MAPK as potential molecular targets involved in the proliferation and survival of angiosarcoma cells. Through anti-cancer drug screening, we found that a RAS inhibitor RMC-7977 effectively suppressed angiosarcoma cell growth. Remarkably, RMC-7977 was effective in both RAS-mutated and wild-type angiosarcoma cells, concurrently leading to a reduction in phosphor-ERK and phosphor-S6K levels. In addition, the RAS signaling pathway was broadly activated across primary angiosarcoma patient tissues (n=13), irrespective of the RAS mutation status. These data suggest that RMC-7977 effectively targets the widespread, pathway-level activation of RAS arising from various upstream alterations in genomically complex angiosarcomas. Our ongoing work involves evaluating the in vivo efficacy of RMC-7977 in angiosarcoma xenograft models harboring both mutant and wild-type RAS. Furthermore, we will dissect the molecular mechanism underlying this broad RAS dependency by assessing the impact of RMC-7977 on activated RAS and downstream signaling, further supporting the rationale for its clinical use in angiosarcoma.
利益披露 Disclosure
D. Lee, None..
S. Choi, None..
E. Nipa, None.