PO.BCS01.03 · 生物信息与计算
NCI的儿童癌症数据计划:推进儿科肿瘤研究
NCI's childhood cancer data initiative: Advancing pediatric cancer research
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
儿童癌症数据计划(CCDI)是一项变革性举措,旨在加速研究并改善患癌儿童、青少年及青年(AYA)的预后。数据是癌症研究的基石,CCDI正在构建一个符合FAIR原则的数据生态系统,该系统作为多方利益相关者的互操作平台,整合各类工具和服务以推进儿科肿瘤研究。所有CCDI工具和资源均可通过CCDI Hub访问,后者是该生态系统的中央入口。其基础始于CCDI数据模型,该模型建立了协调统一的数据标准,以确保数据集间的一致性和互操作性,为发现和分析提供框架。
构建队列:CCDI儿童癌症数据目录(Childhood Cancer Data Catalog)作为儿科和AYA癌症数据资源的综合清单,涵盖登记库、存储库、知识库和目录。它提供研究级摘要,帮助用户识别特定数据类型和研究的所在位置。一旦用户识别出感兴趣的研究,即可转至CCDI Hub Explore Dashboard搜索CCDI数据集。该仪表板在文件级别对数据进行索引,以便于队列构建。用户可在儿童癌症数据共享区(C3DC)内使用临床数据构建队列,或在国家儿童癌症登记库(NCCR)内使用真实世界数据构建队列。在C3DC中构建的队列可导出为包含参与者标识符的清单,随后上传至CCDI Hub以定位相关的基因组、影像或其他数据。同样,用户可将队列导出至NCCR以访问相关的真实世界数据。对于跨机构发现,用户可使用CCDI Federation API跨参与的存储库查询儿科数据集,如同查询单个虚拟数据库一般。所有这些资源均通过CCDI参与者索引(Participant Index)相互连接,该索引跨研究和存储库映射参与者标识符,使研究人员能够连接同一参与者的数据,从而支持数据整合和队列扩展。
分析与可视化:队列构建完成后,研究人员可利用集成的分析和可视化平台进一步探索、解读数据并从中获得见解。癌症基因组学云(Cancer Genomics Cloud)提供了一个基于云的计算环境,研究人员可在其中使用自定义工作流和先进的分析工具分析数据。为使数据对临床医生和非生物信息学人员可及,CCDI提供了直观的可视化平台,如CCDI cBioPortal癌症数据浏览器(Cancer Data Explorer)。CCDI的众多工具和资源整合了来自数千名参与者的数据,共同实现了单独研究时无法获得的新见解。
查看英文原文 English abstract
The Childhood Cancer Data Initiative (CCDI) is a transformative effort to accelerate research and improve outcomes for children, adolescents, and young adults (AYAs) with cancer. Data are the cornerstone of cancer research, and CCDI is building a FAIR-aligned data ecosystem that functions as a multi-stakeholder interoperability platform, integrating diverse tools and services to advance pediatric cancer research. All CCDI tools and resources are accessible through the CCDI Hub, the central entry point to the ecosystem. The foundation begins with the CCDI data model, which establishes harmonized data standards to ensure consistency and interoperability across data sets, offering a framework for discovery and analysis.
Building Cohorts: The CCDI Childhood Cancer Data Catalog serves as a comprehensive inventory of pediatric and AYA cancer data resources, including registries, repositories, knowledgebases, and catalogs. It provides study-level summaries and helps users identify where specific data types and studies are located. Once users identify studies of interest, they can move to the CCDI Hub Explore Dashboard to search CCDI data sets. The dashboard indexes data at the file level to facilitate cohort building. Users can build cohorts within the Childhood Cancer Data Commons (C3DC) using clinical data, or within the National Childhood Cancer Registry (NCCR) using real-world data. Cohorts built in C3DC can be exported as manifests containing participant identifiers, which can then be uploaded to the CCDI Hub to locate associated genomic, imaging, or other data. Similarly, users can export cohorts to NCCR to access related real-world data. For cross-institutional discovery, users can query pediatric data sets across participating repositories using the CCDI Federation API, as if querying a single virtual database.All of these resources are interconnected through the CCDI Participant Index, which maps participant identifiers across studies and repositories and allows researchers to connect data from the same participant, supporting data integration and cohort expansion.
Analysis and Visualization: After cohorts are built, researchers can leverage integrated analysis and visualization platforms to further explore, interpret, and derive insights from the data. The Cancer Genomics Cloud provides a cloud-based computational environment where researchers can analyze data using custom workflows and advanced analytical tools. To make data accessible to clinicians and non-bioinformaticians, CCDI offers intuitive visualization platforms like the CCDI cBioPortal Cancer Data Explorer. Together, CCDI's many tools and resources, integrating data from thousands of participants, enable new insights that would not be possible when studied in isolation.
利益披露 Disclosure
S. Jagu, None..
J. Guidry Auvil, None..
M. Cunningham, None..
B. Sayoldin, None..
P. Dunn, None..
S. Burke, None..
C. Bullen, None..
H. Dingerdissen, None..
R. Steck, None..
M. Ferguson, None..
J. L. Goderre, None..
G. Reaman, None.