PO.BCS01.03 · 生物信息与计算
Application of Bioinformatics to Cancer Biology 3
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2676 · PDF 通过自动化身体成分分析对癌症恶病质进行亚型分类 Subtyping cancer cachexia through automated body composition Sonia Boscenco, Venise Jan Castillon, Perry J. Pickhardt, John W. Garrett, Nathaniel C. Swinburne, Ed Reznik
- 2677 2677 识别并分析p53与拷贝数状态不一致的子宫内膜样子宫内膜肿瘤的临床病理特征 Identifying and analyzing clinicopathological features of uterine endometrial endometrioid tumors discordant by p53 and copy number status Sreekar B. Challa, Jessica D. St. Laurent, Zehra Ordulu, Alexander J. Neil, Melissa S. Gildenberg, Matthew L. Meyerson, Yvonne Y. Li, Andrew D. Cherniack, Elizabeth H. Stover
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2678 · PDF 一种基于原发肿瘤转录组学和组织病理形态学预测前列腺癌转移的多模态模型 A multimodal model to forecast prostate cancer metastasis from primary tumor transcriptomics and histopathology morphology Itzel Valencia, Priyanka Vasanthakumari, Pier V. Nuzzo, Edoardo Francini, Francesco Ravera, Giuseppe N. Fanelli, Sara Bleve, Cristian Scatena, Luigi Marchionni, Mohamed Omar
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2679 · PDF 整合bulk与单细胞转录组学揭示转移性小肠神经内分泌肿瘤中的肝细胞样重编程 Integrated Bulk and Single-Cell Transcriptomics Reveal Hepatocyte-Like Reprogramming in Metastatic Small Intestinal Neuroendocrine Tumors Sunanda Biswas Mukherjee, James P. Madigan, Samira M. Sadowski
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2680 · PDF 癌症细胞系对Complex I突变的剂量依赖性适应 Dosage-dependent adaptations to Complex I mutations in cancer cell lines Neil Ruthen, Ziad El Bakouny, Amy Shepherd, Sonia Boscenco, Benan Nalbant, Caleb Lareau, Payam Gammage, Ed Reznik
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2681 · PDF 既往接触基因毒性癌症治疗与转移性肿瘤中CTCF结合位点局部诱变升高相关 Past exposure to genotoxic cancer therapies is associated with elevated local mutagenesis at CTCF binding sites in metastatic tumors Kevin C. L. Cheng, Jigyansa Mishra, Juri Reimand
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2682 · PDF 对HBV、HCV及非病毒相关HCC的多组学解析揭示不同的增殖、干扰素和代谢特征 Multiomic dissection of HBV-, HCV-, and non-viral HCC reveals distinct proliferation, interferon, and metabolic signatures Amerti Guta, Daniel O'Brien, Aditya V. Bhagwate, Jean-Pierre A. Kocher, Lewis R. Roberts
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2683 · PDF 对患者和临床前数据的多组学分析凸显了在胶质母细胞瘤中靶向肿瘤异质性的挑战 Multi-omic analysis of patient and preclinical data highlights challenges in targeting tumor heterogeneity in glioblastoma Ha Dang, Verah Nyarige, Gonzalo Lopez, Ann Forslund, Wei Zhang, Bo Hu, Junfei Zhao, Maria Ortiz-Estevez, Alexandre Alloy, Romain Georges, Elizabeth Tindall, Josh Baughman, Kai Wang, Jorge Benitez-Hernandez, Celia Fontanillo
- 2684 2684 雄激素受体表达与ER阳性/HER2阴性乳腺癌的免疫浸润及免疫检查点抑制剂应答呈负相关 Androgen receptor expression negatively correlates with immune infiltration and response to immune checkpoint inhibitors in ER-positive/HER2-negative breast cancer Jun Arima, Kohei Chida, Rongrong Wu, Takafumi Shima, Toru Kuramoto, Hiroki Hamamoto, Kohei Taniguchi, Nao Kawaguchi, Ryo Tanaka, Yoshiro Imai, Kosei Kimura, Mitsuhiko Iwamoto, Kenichi Hakamada, Takashi Ishikawa, Sang-Woong Lee, Kazuaki Takabe
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2685 · PDF 利用vmwhere分析长读长测序数据揭示尤文肉瘤中微卫星长度和染色质状态的变异 Analysis of long-read sequencing data with vmwhere reveals variation in microsatellite length and chromatin state in Ewing sarcoma Sara K. Peterson, A. McCauley Massie, Alex Rubinsteyn, Jeremy R. Wang, Ian J. Davis
- 2686 2686 利用地理空间方法提取肝癌组织中的细胞网络和微环境特征以发掘治疗和诊断潜力 Extraction of cellular networks and microenvironmental characteristics in liver cancer tissues using geospatial approaches for therapeutic and diagnostic potential Kanae Echizen, Yoshiki Nonaka, Tomonori Kamiya, Maho Tsuda, Yoshimi Yukawa-Muto, Hideki Fujii, Kenichi Kohashi, Ryo Takahashi, Takahiro Kodama, Naoko Ohtani
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2687 · PDF 胰腺癌首次单片空间解析多组学整合:高通量蛋白质组学与全转录组分析 First single slide spatially resolved multiomic integration of pancreatic cancer: High-plex proteomic and whole transcriptome analysis Mari-Claire McGuigan, Luke McNickle, Assya Legrini, Ghazal Latifi, Claire Kennedy-Dietrich, Hannah Morgan, Olivia McCabe, Fraser Duthie, Tengyu Zhang, Michail Doukas, Andrea Gonzelz Cisar, Yoana Doncheva, Josefina Martinez Vasquez, Yi Cui, Sanghamithra korukonda, Ashley Heck, Kim Young, Joanne Edwards, Joseph Beechem, Nigel Jamieson
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2688 · PDF 统一的前列腺癌单细胞图谱揭示疾病进展过程中的分子亚型和谱系可塑性 A unified prostate cancer single-cell atlas reveals molecular subtypes and lineage plasticity across disease progression Hanbyul Cho, Yuping Zhang, Jiayi Zhou, Rahul Mannan, Saravana M. Dhanasekaran, Xuhong Cao, Arul M. Chinnaiyan
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2689 · PDF 单细胞多组学测序揭示与髓母细胞瘤中ecDNA扩增相关的独特转录程序 Single-cell multiome sequencing reveals distinct transcriptional programs associated with ecDNA amplifications in medulloblastoma Hui Hui, Yan Yuen Lo, Jessica Wang, Rishaan Kenkre, Jon D. Larson, Sunita Sridhar, Owen Chapman, Lukas Chavez
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2690 · PDF 利用连接读长预测晚期前列腺癌中的染色体外DNA Leveraging linked-reads to predict extrachromosomal DNA in advanced prostate cancer Alexander Fortuna, Natalie Fredriksson, Mital Bhakta, Rahul Mannan, Fengyun Su, Rui Wang, Dan Robinson, Yi-Mi Wu, Xuhong Cao, Arul M. Chinnaiyan, Lisa Munding, J. Zachary Sanborn
- 2691 2691 由数据驱动的肿瘤抗原分析指导的逻辑门控Switch-DARPin免疫细胞衔接器:用于开发癌症免疫疗法的计算工作流程 Logic-gated Switch-DARPin-based immune cell engagers guided by data-driven tumor-antigen profiling: A computational workflow for the development of cancer immunotherapies Albulena Toska, Ana Maria Florescu, Eleni Tselempi, Alexander Link, Martin Steegmaier, Marcela Guzman Ayala
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2692 · PDF EpiGuide:通过追踪循环肿瘤DNA中的表观遗传可塑性来监测肿瘤进展 EpiGuide: Tracking epigenetic plasticity in circulating tumor DNA to monitor tumor progression Edoardo Giuili, Renske Imschoot, Sam Kint, Maisa Renata Ferro dos Santos, Lotte Cornelli, Jef Haerinck, Joachim Taminau, Kathleen Schoofs, Ruben Van Paemel, Leander Meuris, Sofie Roelandt, Robin Van Belle, Sofie Van de Velde, Eva De Smet, Nicolas Debusschere, Celine Everaert, Geert Berx, Katleen De Preter
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2693 · PDF 阐明特定癌睾丸抗原在肝细胞癌进展和发生中的作用 Elucidating the role of specific cancer testis antigens in the progression and development of hepatocellular carcinoma Frida Mariana Delgadillo, Barbara Yang, Sabrina Stogoski, Shrikanth S. Gadad, Enrique I. Ramos
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2694 · PDF 剖析EGFR突变型非小细胞肺癌新辅助奥希替尼治疗后耐药性发展的机制 Dissecting the mechanisms of drug resistance development post neoadjuvant osimertinib treatment in EGFR-mutant non-small lung cancer Su-Jin Choi, Jii Bum Lee, Hyuk Jee, Hyo Sup Shim, Byung Jo Park, Chang Young Lee, Min Hee Hong, Byoung Chul Cho, Sun Min Lim
- 2695 2695 HELP-TCR:一个用于T细胞受体库功能分析的统一且可解释的语言处理框架 HELP-TCR: A harmonized and explainable language processing framework for functional analysis of t-cell receptor repertoires Yulyana Kalesnik, Dawid Krawczyk, Maciej Pietrzak, Michal Seweryn
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2696 · PDF 利用可解释的深度学习框架为精准肿瘤学解锁新型基因生物标志物 Unlocking novel gene-based biomarkers using an explainable deep learning framework for precision oncology Sydney Grant, Aritro Nath
- 2697 2697 单细胞转录组学表征揭示前列腺癌双极雄激素治疗应答的通路决定因素 Single-cell transcriptomic characterisation reveals pathway determinants of bipolar androgen therapy response in prostate cancer Rosalia Quezada Urban, Shivakumar Keerthikumar, Peter Lau, Georgia Cuffe, Linda Teng, Ashlee K. Clark, Gail P. Risbridger, Renea A. Taylor, Megan Crumbaker, ANTHONY JOSHUA, Mitchell G. Lawrence
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2698 · PDF MicroRNA表达可在诊断前采集的血清样本中检测金毛寻回犬的犬多中心性淋巴瘤 MicroRNA expression can detect canine multicentric lymphoma in golden retrievers in serum samples taken pre-diagnosis Heather Treleaven, Latasha Ludwig, Alicia M. Viloria-Petit, R. Darren Wood, R. Ayesha Ali, Geoffrey Wood
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2699 · PDF 输卵管上皮体细胞突变的累积与克隆结构 Accumulation of somatic mutation and clonal architecture of fallopian tube epithelium Seoyihl Kim, Wonjune Seo, Soyeon Kim, Taekeun Park, Miso Kim, Bhumsuk Keam, Tae Min Kim, Dong-Wan Kim, Se Ik Kim, Jeonghwan Youk
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2700 · PDF SpaceMarkers 2.0:一个用于空间转录组数据中具有空间感知能力的细胞间通讯分析框架 SpaceMarkers 2.0: A framework for spatially aware cell-cell communication in spatial transcriptomic data Orian Stapleton, Dmitrijs Lvovs, Luciane Tsukamoto Kagohara, Elana Judith Fertig, Atul Deshpande
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2701 · PDF 一种用于预测p53恢复疗法响应并对适应证进行优先排序的转录组学框架 A transcriptomic framework to predict response and prioritize indications for p53 restoration therapy Hosun Lee, Seunghwan Jung, Boram Kim, Seung-Hyun Shin, Yong Ho Heo, Yu-Yon Kim, Daejin Kim, Haemin Chon, In Young Choi
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2702 · PDF 用于追踪泌尿生殖系统肿瘤PDX传代中新抗原保留情况的整合计算流程 Integrative Computational Pipeline for Tracking Neoantigen Retention Across PDX Passages in Genitourinary Cancers Md Imran Khan, Tyler Gross, Christian Migliarese, Ian Shea, Jonathan F. Lovell, Roberto Pili
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2703 · PDF PTMax:一个整合文献挖掘与多组学、用于癌症中磷酸化功能解读的AI赋能平台 PTMax: An AI-enabled platform integrating literature mining and multi-omics for functional interpretation of phosphorylation in cancer Yanling Sun, Sara S. Savage, John M. Elizarraras, Eric Jaehnig, Bing Zhang
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2704 · PDF NCI的儿童癌症数据计划:推进儿科肿瘤研究 NCI's childhood cancer data initiative: Advancing pediatric cancer research Subhashini Jagu, Jaime Guidry Auvil, Mark Cunningham, Bahar Sayoldin, Patrick Dunn, Sean Burke, Catherine Bullen, Hayley Dingerdissen, Rebecca Steck, Martin Ferguson, Johanna Lucinda Goderre, Gregory Reaman, Warren A. Kibbe