PO.BCS01.16 · 生物信息与计算
癌症复杂性知识门户:一个符合FAIR原则的资源发现工具
The Cancer Complexity Knowledge Portal: A FAIR-aligned tool for resource discovery
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
实现可互操作数据和可持续计算工具的发现,有助于最大化共享资源的价值,支持人工和机器驱动的重用。癌症复杂性知识门户(CCKP)由Sage Bionetworks的多联盟协调(MC²)中心在NCI癌症生物学部(DCB)的支持下开发,作为一个公开的、NIH资助的、特定领域的存储库,整合了来自多个DCB联盟的癌症研究资源,包括CSBC、PS-ON、TEC、CCBIR、MetNet和PDMC。该门户为发现和访问癌症研究界产生的数据集、计算工具、出版物及其他成果提供了统一的入口。为支持跨多样化资源和数据模态的共享与可发现性,CCKP采用版本化的元数据模型,这些模型维护在公开的GitHub存储库中,并与NIH通用数据元素(CDE)保持一致。元数据通过Synapse平台进行整理,该平台作为后端存储库支持通过CCKP进行提交、审核和发布。该门户聚合元数据并链接到原始记录,从而容纳存储在网络可访问档案中的材料。统一的搜索界面、可点击的过滤器和相关资源链接可帮助用户导航至相关条目。CCKP包含若干资源特定功能以提升FAIR性:数据集提供Croissant元数据,以支持在AI和ML场景中的重用;癌症复杂性工具包提供自动生成的评估数据,代表已编目研究软件的可持续性和可重用性;访问者可通过与癌症复杂性教育计划的集成访问模块化教育资源。截至2025年底,CCKP索引了来自160多项NCI资助的癌症基金的研究成果,涵盖4,178篇出版物、1,029个数据集和321个计算工具。整理后的数据集代表了关键的生物学主题,包括耐药性或敏感性(574)、肿瘤微环境(563)、转移(358)、演化(289)和表观遗传学(103)。这些数据集横跨多种物种模型,包括人、小鼠和类器官系统,以及测序、成像和空间图谱分析等数据模态。通过借助直观的搜索工具展现整理后的元数据数据库,CCKP将符合FAIR原则的发现付诸实施,以扩大现有资源的重用。此方法同时服务于实验和计算研究界,增强癌症数据的透明度、互操作性和二次利用,以加速机制性洞见和治疗创新。ChatGPT 5.1被用于摘要的初稿撰写和润色。所有内容均经作者评估和批准。
查看英文原文 English abstract
Enabling discovery of interoperable data and sustainable computational tools can help maximize the value of shared resources, supporting both human- and machine-driven reuse. The Cancer Complexity Knowledge Portal (CCKP), developed by Sage Bionetworks' Multi-Consortia Coordinating (MC²) Center with support from the NCI Division of Cancer Biology (DCB), serves as a public, NIH-supported, domain-specific repository that consolidates cancer research resources from multiple DCB consortia, including CSBC, PS-ON, TEC, CCBIR, MetNet, and PDMC. The portal provides a unified entry point for discovering and accessing datasets, computational tools, publications, and other outputs generated by the cancer research community. To support sharing and discoverability across diverse resources and data modalities, the CCKP employs versioned metadata models, which are maintained in a public GitHub repository and aligned with NIH Common Data Elements (CDEs). Metadata are curated through the Synapse platform, which functions as the backend repository supporting submission, review, and release via the CCKP. The portal aggregates metadata and links to original records, thereby accommodating materials stored in web-accessible archives. A unified search interface, clickable filters, and related resource links are available to help users navigate to relevant entries. The CCKP includes a number of resource-specific features to improve FAIRness: Croissant metadata is available for datasets, to support reuse in AI and ML contexts; the Cancer Complexity Toolkit provides auto-generated evaluation data, representing the sustainability and reusability of catalogued research software; visitors can access modularized educational resources via integration with the Cancer Complexity Education Program. As of late 2025, the CCKP indexes research outputs from over 160 NCI-funded cancer grants, encompassing 4,178 publications, 1,029 datasets, and 321 computational tools. Curated datasets represent key biological themes, including drug resistance or sensitivity (574), tumor microenvironment (563), metastasis (358), evolution (289), and epigenetics (103). These datasets span multiple species models, including human, mouse, and organoid systems, and data modalities such as sequencing, imaging, and spatial profiling. By surfacing a curated metadata database with intuitive search tools, the CCKP operationalizes FAIR-aligned discovery to amplify reuse of existing resources. This approach serves both experimental and computational research communities, enhancing transparency, interoperability, and secondary use of cancer data to accelerate mechanistic insights and therapeutic innovation. ChatGPT 5.1 was used for initial abstract drafting and refinement. All content was evaluated and approved by the authors.
利益披露 Disclosure
O. Banks, None..
A. Clayton, None..
A. Gopalan, None..
A. Nelson, None..
V. Chung, None..
A. Heiser, None..
J. Hodgson, None..
A. Nath, None..
A. Hindman, None..
M. Nikolov, None..
A. Taylor, None..
A. Bowen, None..
S. Varma, None..
J. Banerjee, None.