PO.MCB06.03 · 分子与细胞生物学
SMYD5 缺失下调 B 细胞急性淋巴细胞白血病中的增殖信号通路
Loss of SMYD5 downregulates proliferative signaling pathways in B cell acute lymphoblasticleukemia
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
急性淋巴细胞白血病(ALL)的特征是未成熟淋巴母细胞的不受控增殖,导致正常造血受损并可能浸润髓外组织。B 细胞急性淋巴细胞白血病(B-ALL)主要影响 1 至 4 岁的儿童,在年龄较大的人群中发病率逐渐下降。组蛋白甲基转移酶(HMTs)是关键的表观遗传调控因子,其失调与肿瘤的发生和进展相关。SMYD5 基因是 HMT 家族的成员,在 ALL 患者中被发现过表达,并与造血、炎症过程、基因组稳定性和蛋白质合成调控相关。然而,其在 ALL 中的具体作用仍知之甚少。因此,研究 SMYD5 在此背景下的功能,可能提供有助于开发更有效诊断和治疗策略的见解。我们采用了计算机模拟(in silico)和体外(in vitro)分析相结合的方法。使用公共数据库进行计算机模拟分析,以评估 SMYD5 mRNA 在 B 细胞急性淋巴细胞白血病(B-ALL)中的表达。随后,在 REH 白血病细胞系中使用 CRISPR-Cas9 介导的敲除(KO)方法进行体外实验。在蛋白水平确认 SMYD5 缺失后,进行转录组分析以鉴定差异表达基因并研究其在相关生物学通路中的作用。计算机模拟分析显示,与健康骨髓样本相比,SMYD5 mRNA 表达在 B-ALL 样本中显著升高(p = 0.0022)。在体外分析中,比较了各 B-ALL 细胞系间的 SMYD5 mRNA 表达,选择了 REH 细胞系,因为其表达水平最高。随后进行基因敲除(KO),生成了两个 SMYD5 蛋白水平降低的克隆。RNA 测序显示,与野生型细胞系相比,KO 克隆中发生了大量转录变化。GSEA 分析显示,克隆 C52 和 C78 在 E2F Targets(NES = 3.08,FDR < 0.001;NES = 2.93,FDR < 0.001)、Myc Targets V1(NES = 2.88,FDR < 0.001;NES = 2.86,FDR < 0.001)和 Myc Targets V2(NES = 2.31,FDR < 0.001;NES = 2.33,FDR < 0.001)中呈正富集。敲除克隆中 SMYD5 的减少与关键增殖通路的下调相关,提示其参与维持增殖能力和白血病发生。文献证据表明,E2F 和 Myc Targets(V1 和 V2)通路调控 B-ALL 中的促增殖转录程序。因此,我们的研究结果提示,SMYD5 缺失会抑制这些转录程序,可能降低白血病细胞的增殖速率,并突显该基因作为潜在治疗靶点的价值。
查看英文原文 English abstract
Acute lymphoblastic leukemia (ALL) is characterized by the uncontrolled proliferation of immature lymphoblasts, leading to impaired normal hematopoiesis and potential infiltration of extramedullary tissues. B-cell acute lymphoblastic leukemia (B-ALL) predominantly affects children aged 1 to 4 years, with a progressive decline in incidence in older age groups. Histone methyltransferases (HMTs) act as key epigenetic regulators, and their dysregulation has been associated with tumor initiation and progression. The SMYD5 gene, a member of the HMT family, is found to be overexpressed in ALL patients and has been linked to hematopoietic, inflammatory processes, genomic stability and regulation of protein synthesis. However, its specific role in ALL remains poorly understood. Therefore, investigating the function of SMYD5 in this context may provide insights that contribute to the development of more effective diagnostic and therapeutic strategies. We performed a combination of in silico and in vitro analyses. In silico analyses using public databases were conducted to evaluate SMYD5 mRNA expression in B-cell acute lymphoblastic leukemia (B-ALL). Subsequently, in vitro experiments were performed using a CRISPR-Cas9-mediated knockout (KO) approach in the REH leukemic cell line. Following confirmation of SMYD5 loss at the protein level, transcriptomic profiling was carried out to identify differentially expressed genes and to investigate their involvement in relevant biological pathways. In silico analysis revealed that SMYD5 mRNA expression was significantly higher in B-ALL samples compared with healthy bone marrow samples (p = 0.0022). In the in vitro analysis , SMYD5 mRNA expression was compared across B-ALL cell lines, and the REH cell line was selected because it displayed the highest expression level. Subsequently, gene knockout (KO) was performed, resulting in the generation of two clones with reduced SMYD5 protein levels. RNA sequencing revealed substantial transcriptional changes in the KO clones compared with the wild-type cell line. GSEA analysis revealed positive enrichment in clones C52 and C78 for the E2F Targets (NES = 3.08, FDR < 0.001; NES = 2.93, FDR < 0.001), Myc Targets V1 (NES = 2.88, FDR < 0.001; NES = 2.86, FDR < 0.001), and Myc Targets V2 (NES = 2.31, FDR < 0.001; NES = 2.33, FDR < 0.001). The reduction of SMYD5 in knockout clones was associated with downregulation of key proliferative pathways, suggesting its involvement in maintaining proliferative capacity and leukemogenesis. Literature evidence indicates that the E2F and Myc Targets (V1 and V2) pathways regulate pro-proliferative transcriptional programs in B-ALL. Accordingly, our findings suggest that SMYD5 loss dampens these transcriptional programs, potentially reducing the proliferative rate of leukemic cells and highlighting this gene as a potential therapeutic target.
利益披露 Disclosure
B. Santana, None..
M. de Loyola, None..
B. Henrique, None..
A. Gualberto, None..
F. Pittella-Silva, None.