PO.TB10.18 · 肿瘤生物学
StromaBlast™:一种基于CRISPR的新型功能基因组学平台,用于识别肿瘤微环境中的治疗靶点
StromaBlast™: A novel CRISPR-based functional genomics platform to identify therapeutic targets within the tumor microenvironment
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
背景:实体瘤微环境(TME)在调控肿瘤进展、转移和治疗耐药性中发挥关键作用。它是由癌症相关成纤维细胞(CAF)、免疫细胞、内皮细胞、细胞外基质(ECM)和可溶性介质构成的复杂网络。肿瘤学的最新进展已将治疗范式从以癌细胞为中心转向以TME为中心的模型,凸显了基质成分在塑造肿瘤行为中的重要性。其中,CAF代表功能上占主导地位的基质细胞群,通过包括ECM重塑、旁分泌信号和代谢重编程在内的多方面机制驱动耐药性。这些过程共同创造了一个保护性生态位,促进药物耐受和免疫逃逸。
方法:为克服仅依赖单培养癌症模型的传统发现筛选的局限性,我们开发了StromaBlast™,这是一种下一代CRISPR筛选平台,纳入了癌细胞、CAF和免疫细胞的共培养。使用Cas9介导的敲除和基于dCas9的激活方法,我们在模拟纤维化肿瘤中治疗性抗体暴露和T细胞介导杀伤的条件下,对肺癌细胞进行了全面的CRISPR表面组筛选。我们的筛选经过优化,以识别CAF-癌细胞-免疫细胞串扰中涉及的必需相互作用网络和新型治疗靶点。
结果:StromaBlast™筛选发现了若干对癌细胞存活以及在CAF丰富微环境中通讯至关重要的新型和已知靶点。比较分析区分了表现出CAF依赖性的靶点与独立于基质相互作用发挥功能的靶点。功能验证证实了选定靶点在CAF存在下维持癌细胞活力的关键作用。这些发现提名了适合开发为生物制剂的可操作靶点,包括T细胞衔接器和抗体药物偶联物,旨在破坏CAF-癌细胞相互作用并恢复抗肿瘤免疫活性。
结论:纤维化、CAF富集的肿瘤因CAF-ECM介导的物理屏障和免疫抑制而对免疫疗法和基于抗体的治疗具有显著耐药性。StromaBlast™代表了一个变革性平台,用于发现能够克服这种耐药性的治疗靶点。靶向通过该方法识别的CAF依赖性弱点,有望将免疫冷、纤维化的肿瘤转变为免疫活跃、治疗敏感的状态——推进精准肿瘤学并改善患者结局。
查看英文原文 English abstract
Background: The solid tumor microenvironment (TME) plays a critical role in regulating tumor progression, metastasis, and therapeutic resistance. It is a complex network of cancer-associated fibroblasts (CAFs), immune cells, endothelial cells, extracellular matrix (ECM), and soluble mediators. Recent advances in oncology have shifted the therapeutic paradigm from a cancer cell-centric to a TME-centric model, underscoring the importance of stromal components in shaping tumor behavior. Among these, CAFs represent the functionally dominant stromal population, driving resistance through multifaceted mechanisms including ECM remodeling, paracrine signaling, and metabolic reprogramming. These processes collectively create a protective niche that fosters drug tolerance and immune evasion.
Methods: To overcome the limitations of traditional discovery screens that rely solely on monoculture cancer models, we developed StromaBlast™, a next-generation CRISPR screening platform which incorporates co-cultures of cancer cells, CAFs, and immune cells. Using both Cas9-mediated knockout and dCas9-based activation approaches, we performed a comprehensive CRISPR surfaceome screen in lung cancer cells under conditions that simulate therapeutic antibody exposure and T-cell mediated killing in fibrotic tumors. Our screen was optimized to identify essential interaction networks and novel therapeutic targets involved in CAF-cancer-immune cell crosstalk.
Results: The StromaBlast™ screen uncovered several novel and known targets that are essential for cancer cell survival and communication within a CAF-rich microenvironment. Comparative analyses distinguished targets exhibiting CAF dependency from those functioning independently of stromal interactions. Functional validation confirmed the critical role of select targets in sustaining cancer cell viability in the presence of CAFs. These findings nominate actionable targets amenable to development as biologics, including T-cell engagers and antibody-drug conjugates, designed to disrupt CAF-cancer cell interactions and restore anti-tumor immune activity.
Conclusion: Fibrotic, CAF-enriched tumors are notoriously resistant to immunotherapy and antibody-based treatments due to CAF-ECM-mediated physical barriers and immune suppression. StromaBlast™ represents a transformative platform for discovering therapeutic targets that can overcome this resistance. Targeting CAF-dependent vulnerabilities identified through this approach holds the potential to convert immune-cold, fibrotic tumors into immune-active, therapy-sensitive states - advancing precision oncology and improving patient outcomes.
利益披露 Disclosure
A. Emran, None..
L. Gong, None..
N. Patsoukis, None..
Y. Yang, None..
R. Fekade, None..
F. Ma, None..
J. Tatineni, None..
R. Tang, None..
A. Al-Shami, None..
P. Seth, None..
T. Oravecz, None.