PO.BCS01.05 · 生物信息与计算

机器学习加速发现协同性PI3K-mTOR组合,用于强效抑制KRAS G12突变患者来源异种移植瘤的肿瘤生长

Machine learning accelerates discovery of synergistic- PI3K-mTOR combinations for robust tumor growth inhibition in KRAS G12 mutant patient-derived xenografts

编号 5453 展板 20 时间 4/21 02:00–05:00 区域 Section 1 主讲 Raffaella Pippa, PhD
分会场 Application of Bioinformatics to Cancer Biology 5
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作者与单位 Authors & Affiliations

Emily Eastwood, Yuan-Hung Chien, Jose Lopez-Ramos, Paris Offor, Warren Andrews, Long Hoang Do, Raffaella Pippa

Certis Oncology Solutions, San Diego, CA

摘要 Abstract

中文摘要
识别有效的药物组合仍是肿瘤学中的一大挑战,主要归因于固有耐药性以及传统体外筛选数据有限的临床保真度。为解决这一转化障碍,我们建立了一个稳健的平台,利用Certis Oncology专有的患者来源异种移植(PDX)模型(该模型与临床反应具有高度相关性)来预测和验证协同治疗方案。 我们的方法采用了CertisAI TM——一个在高通量组合实验上训练的专有机器学习(ML)模型集成。CertisAI TM成功地将靶向PI3K和mTOR通路的组合列为治疗侵袭性KRAS G12突变肿瘤(涵盖非小细胞肺癌、胃癌、胰腺癌和结直肠癌)的先导候选方案。我们在不同的KRAS G12突变PDX模型中,对六种PI3K抑制剂和四种mTOR抑制剂构成的综合矩阵进行了实验评估。这些离体(ex-vivo)研究严格证明,对PI3K-mTOR轴的双重抑制产生了强效、协同的抗肿瘤活性,在所有测试模型中均持续产生高效且持久的肿瘤细胞减少。值得注意的是,一个关键的协同组合——依维莫司(Everolimus)或他克莫司(Tacrolimus,mTORi)与Inavolisib(PI3Ki)配伍——在PDX环境中直接转化为显著的治疗获益。 这些发现验证了我们基于PDX的策略在快速识别具有临床意义的协同组合方面的价值。依维莫司/他克莫司 + Inavolisib组合所展现的疗效提供了令人信服的临床前证据,确立了这种双药联合方法作为KRAS G12突变实体瘤临床评估的有力治疗候选方案。
查看英文原文 English abstract
Identifying effective drug combinations remains a major challenge in oncology, primarily due to inherent resistance and the limited clinical fidelity of conventional in vitro screening data. To address this translational barrier, we established a robust platform utilizing Certis Oncology's proprietary patient-derived xenograft (PDX) models, which offer high correlation with clinical responses, to predict and validate synergistic therapeutic regimens. Our approach leveraged CertisAI TM , an ensemble of proprietary machine learning (ML) models trained on high-throughput combination experiments. CertisAI TM successfully prioritized combinations targeting the PI3K and mTOR pathways as lead candidates for treating aggressive KRAS G12 mutant tumors, spanning non-small cell lung, gastric, pancreatic, and colorectal cancers. We experimentally evaluated a comprehensive matrix of six PI3K inhibitors and four mTOR inhibitors across distinct KRAS G12 mutant PDX models. These ex-vivo studies rigorously demonstrated that the dual inhibition of the PI3K-mTOR axis resulted in potent, synergistic anti-tumor activity, consistently yielding efficient and sustained tumor cell reduction across all tested models. Notably, a key synergistic combination-involving Everolimus or Tacrolimus (mTORi) paired with Inavolisib (PI3Ki)-translated directly to significant therapeutic benefit in the PDX setting. These findings validate our PDX-informed strategy for rapidly identifying clinically relevant, synergistic combinations. The demonstrated efficacy of the Everolimus/Tacrolimus + Inavolisib combination provides compelling preclinical evidence, establishing this dual-agent approach as a strong therapeutic candidate for clinical evaluation in KRAS G12 mutant solid tumors.
利益披露 Disclosure
E. Eastwood, None.. Y. Chien, None.. J. Lopez-Ramos, None.. P. Offor, None.. W. Andrews, None.. R. Pippa, None.

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