LBPO.BCS02 · 生物信息与计算 · Late-Breaking
Somatic DiagAI:对药物-变异关联进行自动评分以支持癌症基因组学中的临床决策
Somatic DiagAI: Automated scoring of drug-variant associations to support clinical decision-making in cancer genomics
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摘要 Abstract
中文摘要
大规模基因面板测序已成为识别肿瘤生物标志物的关键工具,可在当代肿瘤学中指导治疗优化和临床试验入组。然而,基因组学知识的快速演进给病理学家在保持对药物-变异关联的最新专业知识以及准确优先排序临床可操作基因改变方面带来了重大挑战。
SeqOne开发了somatic DiagAI,这是一种新型机器学习框架,旨在通过为每个潜在的药物-变异关联计算定量评分(0-100)来系统性地优先排序可操作变异。该模型整合了四个关键参数:(1)基因变异的生物学意义,(2)相关治疗药物的药理学特征,(3)分子谱与获批治疗适应症之间的一致性,以及(4)患者特异性临床背景。
该模型量化每个组成部分的贡献,并生成一个使预测可解释和可追溯的评分。该模型使用一个通过TSO 500基因面板分析的604例患者队列进行训练和验证,这些患者具有记录在案的临床适应症和专家审编的变异注释。通过整合包括JAX-CKB和gnomAD在内的成熟数据库增强了变异表征,临床解释则根据Compermed指南进行。
该方法提供了一个系统性框架用于变异优先排序,以应对精准肿瘤学决策日益增长的复杂性。
查看英文原文 English abstract
Large-scale gene panel sequencing has emerged as a critical tool for identifying tumor biomarkers that guide treatment optimization and clinical trial enrollment in contemporary oncology. However, the rapid evolution of genomic knowledge shows significant challenges for pathologists in maintaining current expertise regarding drug-variant associations and accurately prioritizing clinically actionable genetic alterations.
SeqOne has developed somatic DiagAI, a novel machine learning framework designed to systematically prioritize actionable variants by computing a quantitative score (0-100) for each potential drug-variant association. The model integrates four critical parameters: (1) the biological significance of genetic variants, (2) pharmacological characteristics of associated therapeutics, (3) concordance between molecular profiles and approved treatment indications, and (4) patient-specific clinical context.
The model quantifies the contribution of each component and generates a score that makes predictions interpretable and traceable.The model was trained and validated using a cohort of 604 patients analyzed via TSO 500 gene panels, with documented clinical indications and expert-curated variant annotations. Variant characterization was enhanced through integration of established databases including JAX-CKB and gnomAD, with clinical interpretation performed according to Compermed guidelines.
This approach provides a systematic framework for variant prioritization that addresses the growing complexity of precision oncology decision-making.
利益披露 Disclosure
N. Duforet Frebourg, None.
D. Ganiewich,
SeqOne Other, consultant.
M. Nemcek,
SeqOne Inc Employment.