PO.TB09.01 · 肿瘤生物学
染色体外MDM2扩增定义了一种ecDNA允许性肿瘤细胞状态,该状态影响跨癌种的细胞间肿瘤异质性和治疗反应
Extrachromosomal MDM2 amplifications define an ecDNA-permissive tumor cell state that impacts intercellular tumor heterogeneity and treatment response across cancers
作者与单位 Authors & Affiliations
摘要 Abstract
中文摘要
染色体外DNA(ecDNA)以高拷贝数变异性扩增癌基因,促进异质性、快速肿瘤演化和治疗失败。MDM2是TP53的关键负调控因子,常在ecDNA上扩增,然而其对ecDNA动态及ecDNA剂量驱动的治疗反应的影响仍不清楚。我们整合了泛癌ecDNA重建(TCGA + PCAWG)、单细胞DNA FISH和ImmunoFISH、scRNA-seq、来自细胞系和PDX模型的scG&T-seq数据以及急性药物扰动,以分析染色体外MDM2扩增对ecDNA维持、TP53功能和治疗反应的影响。与既往工作一致,我们对泛癌ecDNA重建(TCGA + PCAWG)的分析揭示MDM2是ecDNA上最常扩增的癌基因,且主要在染色体外扩增,而非在均质染色区(HSR)上。在100余个反复扩增的癌基因中,我们发现MDM2是最强的ecDNA偏向性驱动因素之一,并与扩增子尺寸和复杂性增加相关。与HSR上的MDM2扩增不同,MDM2 ecDNA几乎仅出现在TP53野生型肿瘤中,并频繁与其他ecDNA癌基因共存,提示MDM2 ecDNA创造了一种表型上TP53缺陷的状态,支持ecDNA的维持和多样化。在神经母细胞瘤和星形细胞瘤模型中,MDM2 ecDNA拷贝数与蛋白质和转录本丰度紧密相关,产生显著的单细胞异质性。如此,MDM2拷贝数决定了TP53活性,并在单细胞水平上对细胞毒性或靶向治疗的治疗结局产生不同影响,这通过联合荧光原位杂交与免疫荧光(FISH/IF)以及G&T测序数据加以确定。化疗迅速富集了TP53信号降低的ecDNA高表达细胞,而药理性MDM2抑制(Nutlin-3a/Idasanutlin)则通过TP53依赖性凋亡选择性清除ecDNA高表达亚克隆。同样,MDM2抑制也降低了具有MYCN扩增的神经母细胞瘤细胞系和PDX中的MYCN拷贝数,表明TP53激活会跨不同癌基因破坏ecDNA允许性状态。我们的研究证明MDM2 ecDNA是人类癌症中最主要的ecDNA癌基因,并在TP53野生型肿瘤中定义了一种ecDNA允许性状态,该状态促进对不同治疗压力的快速适应。这些结果确定MDM2 ecDNA拷贝数变异是急性治疗反应的功能性决定因素,并揭示MDM2调控的TP53功能是携带ecDNA的癌症中的一个脆弱点,可通过合理的治疗排序加以利用。
查看英文原文 English abstract
Extrachromosomal DNA (ecDNA) amplifies oncogenes with high copy-number variability, promoting heterogeneity, rapid tumor evolution and treatment failure. MDM2, a key negative regulator of TP53, is frequently amplified on ecDNA, yet its impact on ecDNA dynamics and ecDNA dosage-driven treatment responses remains unclear. We integrated pan-cancer ecDNA reconstructions (TCGA + PCAWG), single-cell DNA FISH and ImmunoFISH, scRNA-seq, scG&T-seq from cell lines and PDX models with acute drug perturbations to analyze the impact of extrachromosomal MDM2 amplifications on ecDNA maintenance, TP53 function and treatment response. Consistent with prior work, our analysis of pan-cancer ecDNA reconstructions (TCGA + PCAWG) revealed that MDM2 is the most frequently amplified oncogene on ecDNA and is predominantly amplified extrachromosomally rather than on homogeneously staining regions (HSRs). Among over 100 recurrently amplified oncogenes, we found MDM2 to be one of the strongest ecDNA-biased drivers and to be associated with increased amplicon size and complexity. In contrast to MDM2 amplifications on HSR, MDM2 ecDNA almost exclusively arose in TP53 -wildtype tumors and frequently co-occurred with additional ecDNA oncogenes, suggesting that MDM2 ecDNA creates a phenotypically TP53 -deficient state that supports ecDNA maintenance and diversification. In neuroblastoma and astrocytoma models, MDM2 ecDNA copy number tightly correlated with protein and transcript abundance, generating pronounced single-cell heterogeneity. In this way MDM2 copy number determined TP53 activity and differentially affected treatment outcome in response to cytotoxic or targeted therapies at single-cell level as determined by combined fluorescence-in-situ hybridization and immunofluorescence (FISH/IF) and G&T sequencing data. Whereas chemotherapy rapidly enriched for ecDNA-high cells with reduced TP53 signaling, pharmacologic MDM2 inhibition (Nutlin-3a/Idasanutlin) selectively eliminated ecDNA-high subclones through TP53-dependent apoptosis. Similarly, MDM2 inhibition also reduced MYCN copy numbers in neuroblastoma cell lines and PDX with MYCN amplification, indicating that TP53 activation disrupts ecDNA-permissive states across different oncogenes. Our study demonstrates that MDM2 ecDNA is the predominant ecDNA oncogene in human cancers and defines an ecDNA-permissive state in TP53 -wildtype tumors which facilitates rapid adaptation to different therapeutic pressures. These results identify MDM2 ecDNA copy number variation as a functional determinant of acute treatment responses and reveal MDM2-regulated TP53 function as a vulnerability in ecDNA-carrying cancers that may be exploited through rational treatment sequencing.
利益披露 Disclosure
R. Schmargon, None..
G. Montuori, None..
E. Rodriguez-Fos, None..
L. Brückner, None..
D. Gürgen, None..
A. Henssen, None..
J. Dörr, None.