PO.BCS01.02 · 生物信息与计算
Application of Bioinformatics to Cancer Biology 2
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1407 · PDF 单细胞长读长转录组学揭示罕见腹膜假黏液瘤疾病的以异构体为中心的分子特征 Single-cell long-read transcriptomics reveals isoform centric molecular features of rare pseudomyxoma peritonei disease Kyungtae Lee, Anuja Sathe, Raegan Wood, Dongin Lee, Billy Lau, Hanlee P. Ji
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1408 · PDF MicroNucML:一种用于微核分割及细化核-微核关系的机器学习方法 MicroNucML: A machine learning approach for micronuclei segmentation and the refinement of nuclei-micronuclei relationships Nadejda B. Boev, Yukai Wang, Ulises O. Garcia, Kate M. MacDonald, Shane M. Harding, Sushant Kumar
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1409 · PDF 利用游离DNA甲基化进行融合表观分型可改善非小细胞肺癌中可干预的ALK融合的检测 Fusion epigenotyping using cell‑free DNA methylation improves detection of actionable ALK fusions in non-small cell lung cancer Laura Tung, Anton Valouev, Justin Odegaard, Lauren Lawrence, Nicole Zhang, Martina Lefterova, Matthew Ellis, Tingting Jiang, Sheila Solomon, Darya Chudova
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1410 · PDF 同源重组的转录沉默定义了浸润性小叶癌中一种功能性HRD Transcriptional silencing of homologous recombination defines a functional HRD in invasive lobular carcinoma Yona Kim, Yeseul Kim, Harim Oh, Sung Hak Lee, Sangjeong Ahn, You-Na Sung
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1411 · PDF 染色体外DNA扩增定义了胃癌中一个高危亚组及独特的分子特征 Extrachromosomal DNA amplification defines a high-risk subgroup and unique molecular features in gastric cancer Jieun Lee, Donghyeok Seol, Seunghyun Kang, Chanmi Bang, Mira Yoo, Soyeon Kim, Hyeongjin Cho, So Hyun Kang, Young Suk Park, Sang-Hoon Ahn, Hyung-Ho Kim, Eunhee YI, Sanghyun Kim, Hoon Kim, Yun-Suhk Suh
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1412 · PDF 以信息学驱动的空间组学用于妇科肿瘤癌症免疫治疗发现 Informatics-driven spatial-omics for cancer immunotherapy discovery in gynecologic cancers Rongting Huang, Diane Libert, Arslan Kasimov, Leandra Kingsley, Sahar Nasr, Reem Al-Humadi, Lindsey A. Finch, Elisabeth Diver, Ravali A. Reddy, Babak Litkouhi, Kristin Bixel, Sizun Jiang, Brooke Howitt
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1413 · PDF 尤文肉瘤亚型中可靶向的基因依赖性 Targetable gene dependencies in Ewing sarcoma subtypes Dusan Pesic, Josh Nash, Timmy Wen, Pedro Lemos Ballester, Livia Garzia, Olivier Delattre, David Malkin, Adam Shlien
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1414 · PDF 共享的肠道病毒组特征凸显HIV-蠕虫共感染中潜在的早期结直肠癌标志物 Shared gut virome profiles highlight potential early colorectal cancer markers in HIV-helminth co-infection Botle Precious Damane, Thanyani V. Mulaudzi, Jonathan Featherston, Sayed Shakeel Kader, Pragalathan Naidoo, Zodwa Dlamini, Zilungile Lynette Mkhize-Kwitshana
- 1415 1415 PARP1异构体及其与核仁素相互作用的全面计算研究:结构洞见及对乳腺癌的意义 A comprehensive computational study of PARP1 isoforms and their interactions with nucleolin: Structural insights and implications for breast cancer Nathaniel Zimmerman, Grela Jerliu, Naomi Hutchinson, Anjana Saxena, Shaneen M. Singh
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1416 · PDF 应激反应性糖皮质激素受体信号塑造肺癌的免疫肿瘤微环境 Stress-responsive glucocorticoid receptor signaling shapes the immune tumor microenvironment in lung cancer Sabrina Akter, Aiman Soliman, Robert A. Winn, Zeynep Madak-Erdogan, Sage J. Kim
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1417 · PDF 以Bulk RNA-seq图谱指导的肿瘤转录组注释 Bulk RNA-seq atlas guided annotation of tumor transcriptomes Timmy T. Wen, Dusan Pesic, Pedro L. Ballester, Josh Nash, Adam Shlien
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1418 · PDF 利用DeepSAP发现前列腺癌中新的剪接位点 Uncovering novel splice junctions in prostate cancer using DeepSAP Pankaj Vats, Fadel Berakdar, Thomas D. Wu, Tong Zhu, Mehrzad Samadi
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1419 · PDF 整合空间和遗传谱系追踪揭示Group3和Group4髓母细胞瘤复发背后的细胞状态可塑性 Integrated spatial and genetic lineage tracing uncovers cell state plasticity underlying recurrence in group3 and group4 medulloblastoma Bohyeon Yu, Emanuele Filiberto Rosatti, Jangham Jung, Abhinav Jain, Joanna Phillips, Aaron Antonio Diaz
- 1420 1420 利用免疫检查点抑制剂治疗结局预测进行胃癌空间转录组实验的基于图像的ROI选择 Image-based ROI selection for spatial transcriptomic experiments using immune checkpoint inhibitor treatment outcome prediction in gastric cancer Sunho Park, Minji Kim, Jean R. Clemenceau, Seock-Jin Chung, Eric F. Sha, Changjin Hong, Soyoung Im, Hwanil Choi, Soonyoung Lee, Jongseong Jang, Kohei Shitara, Sung Hak Lee, Jae-Ho Cheong, Tae Hyun Hwang
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1421 · PDF 儿童泛癌中转座元件的表征及其受种系TP53变异的调控 Pediatric pan-cancer characterization of transposable elements and their modulation by germline TP53 variants Brianne Laverty, Shilpa Yadahalli, Safa Majeed, Ashby Kissoondoyal, Laura Raiti, Ann Gong, Noa Alon, Kashif Daud, Alexander Solovyov, Scott Davidson, Yisu Li, Mehdi Layeghifard, Adam Shlien, David Malkin, Vallijah Subasri
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1422 · PDF 表征癌症联合治疗中的临床毒性 Characterizing clinical toxicity in cancer combination therapies Alexandra M. Wong, Cecile Meier-Scherling, Lorin Crawford
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1423 · PDF 从FFPE存档组织检测非整倍体:一种针对FFPE-CUTAC数据的计算方法 Aneuploidy detection from FFPE archived tissues: A computational approach for FFPE-CUTAC data Aditya T. Parmar, Yiyang Niu, Kami Ahmad, Steven Henikoff, Ye Zheng
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1424 · PDF 通过单细胞核RNA测序鉴定化生性乳腺癌中独特的肿瘤生态系统 Unique tumor ecosystems in metaplastic breast cancer identified through single nucleus RNA sequencing Aatish Thennavan, Tuan M Tran, Jianzhuo Li, Clinton Yam, Nicholas E. Navin
- 1425 1425 利用Multiomics2Targets2工作流程鉴定肿瘤特异性膜靶点、疗法及用于实验验证的匹配细胞系 Identifying tumor-specific membrane targets, therapeutics, and matching cell lines for experimental validation with the Multiomics2Targets2 workflow Anna I. Byrd, Lily D. Taub, Avi Ma'ayan
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1426 · PDF 单细胞肿瘤图谱定义了稳健的通路和基因特征,可用于癌症细胞系保真度评估 A single-cell tumor atlas defines robust pathway and gene signatures enabling cancer cell-line fidelity assessment Rosyli F. Reveron-Thornton, Chuner Guo, James P. Agolia, Maria Moozhiyil Korah, Peter Yuxin Xie, Andrea Delitto, Amanda Gonçalves, Angela Tabora, Biren Reddy, Wesley Bobst, Amanda R. Kirane, Monica Dua, Brendan Visser, Byrne Lee, George Poultsides, Jeffrey A. Norton, Derrick C. Wan, Michael T. Longaker, Deshka Foster, Daniel Delitto
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1427 · PDF 通过元聚类方法探索胰腺导管腺癌的高分辨率亚型 Exploring high-resolution subtypes for pancreatic ductal adenocarcinoma via a meta-clustering approach Nick Boos Peterson, Jieqiong Wang, Shibiao Wan
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1428 · PDF 骨肉瘤的单细胞RNA-seq分析揭示了跨部位和跨物种的保守及独特生态系统 Single cell RNA-seq analysis of osteosarcoma reveals conserved and distinct ecosystems across sites and species Yogesh Budhathoki, Matthew Cannon, Troy A. Mceachron, Anand G. Patel, Matthew Gust, Jaime F. Modiano, Dylan T. Ammons, Kathryn Cronise, Daniel Regan, Heather Gardner, Ryan D. Roberts
- 1429 1429 应激反应性基因组改变揭示了PTSD生物学与乳腺癌侵袭性之间的双向关系 Stress-responsive genomic alterations reveal a bi-directional relationship between PTSD biology and breast cancer aggressiveness Alakesh Bera, Meera Srivastava
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1430 · PDF 泛癌单细胞图谱揭示跨癌种保守的肿瘤印记T细胞状态 Conserved tumor imprinted T cell states across cancers revealed by pan cancer single cell atlases Yan Zong, Hongru Shen, Yajing Bi, Xiangchun Li
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1431 · PDF 动物模型和人类患者肝癌发生过程中中性粒细胞的功能异质性 Functional heterogeneity of neutrophils in hepatocarcinogenesis in animal models and human patients Zhihao Huang, Wang Xiaopeng, Wei Dai, Xin-Yuan Guan, Feng Gen-Sheng
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1432 · PDF 用于前列腺癌预后判断的单细胞来源基因对分类器 Single-cell-derived gene-pair classifiers for prostate cancer prognostication Lucio Queiroz, Karnika Singh, Wikum Dinalankara, Luigi Marchionni
- 1433 1433 在All of Us研究计划中,非洲血统男性13q12染色体带上与前列腺癌风险相关的非连续单倍型模式的证据 Evidence of noncontiguous haplotype patterns at chromosome band 13q12 associated with prostate cancer risk in men of African ancestry in the All of Us Research Program William Peter Letsou, Daniel Galvin Gusmano, Meet Boghani, Ifti M. Gazi, Ashwin Nori
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1434 · PDF 用于无富集液体活检中罕见事件检测和单细胞表型分析的可扩展、无监督深度学习框架 Scalable, unsupervised deep learning frameworks for rare event detection and single cell phenotyping in enrichment free liquid biopsies Dean Tessone, Amin Naghdloo, Javier Murgoitio-Esandi, Jeremy Mason, Assad Oberai, James B. Hicks, Peter Kuhn